Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2937 ATGGCATACCAACCGATTCAGGGTCCAAGTTCGGGATCGAGTTCAAGTTCCGGTTTTCAACTATTCAACTCTCCTTTTGGCGATACCACTTATACTAAGGTTTTTGTTGGGGGATTGGCTTGGGAGACTCAGACCGAAACATTGCGCCGCCACTTCGAACAGTTTGGCGACATTCTTGAAGCCGTCGTAATCACCGATAAGAATACTGGCCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCTGAGGCCGCTAGCAGAGCATGTGCCGATCCAACTCCTATAATTGATGGTAGGAGGGCAAACTGTAACTTGGCTTCACTTGGGCGACCACGGCCTCCTCTGCCTTATGGACGGTTGAGACCAACCTCCCCTTACATAGGAAGTCTGCAACCAACCCGAGGGGCTTATGTTGGAGGTTTTGGCTTCCAGCAGCCAGTTCCATACAGCTATCAACAAGGATTGGTTTATCCTCCTTATGGGTATACGACATATGGACCTGAATACATCTACCCGCAGGGTCTGTATAACCCCTATATGGGTCAGCAGTACATGCAGATATATGGAGTGCCTGGTGGAGTCAATGCAACTATTTATCCTTATGGACAAGTTGGTCAAGCTATTCCAAGTGGTCATAGTTTTACAGCAATGCAGGGCTATGCAGTGCCGAGTCATCAGATTGTGCCTCATGGTGGAACCAATGTCAATTCCTTGACAACTTCTCCTATGCCTAATGTTCAAGCACCATATCCTAGTGGAATTGCTGCACCAGTTCCTGGCCAGCCTCAATTTATTGTTCCTGCTCCTTCTCCGCAATTTATGCAAGGTAGCGGTCCTGATCAAATAGCTGGGTATCCTTTGTTTGCAGCAGGACTAGAAGCAGTGGAACTGCTACTTGAGTAG 906 0.4801 MAYQPIQGPSSGSSSSSGFQLFNSPFGDTTYTKVFVGGLAWETQTETLRRHFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAASRACADPTPIIDGRRANCNLASLGRPRPPLPYGRLRPTSPYIGSLQPTRGAYVGGFGFQQPVPYSYQQGLVYPPYGYTTYGPEYIYPQGLYNPYMGQQYMQIYGVPGGVNATIYPYGQVGQAIPSGHSFTAMQGYAVPSHQIVPHGGTNVNSLTTSPMPNVQAPYPSGIAAPVPGQPQFIVPAPSPQFMQGSGPDQIAGYPLFAAGLEAVELLLE 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2937 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Dere05g2937 301 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Dere05g2937 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Dere05g2937 301 SUPERFAMILY RNA-binding domain, RBD 10 120 IPR035979 GO:0003676
Dere05g2937 301 Gene3D - 6 116 IPR012677 -
Dere05g2937 301 SMART rrm1_1 33 105 IPR000504 GO:0003723
Dere05g2937 301 CDD RRM_RBM24_RBM38_like 32 107 - -
Dere05g2937 301 PANTHER BOULE-RELATED 10 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2937 Dere-ChrDere05 39787691 39792059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2937 21 108 C2H2 Transcription Factor Family AT2G19380 40.909 1.77e-15 74.7