Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2923 ATGGTCCCTCGTTTTGTCAGCTGTACGCCTTCTACCCCATCTCCGTTTCCTTCTACAGTCTTTCAATTCCAACTATTTAGCATGGGACGGGATGAAATATTTCGGGAAAGGCTGCTGGATATGATGGCTGCAAGCTGGGATGGAAGTAATGACCCTGGCAGTCAGTCTGACGAGAGCTATCATTTTGAGAGGCTGCACATTGAACCTATTTATGATGCTTTTGTATGTCCTCTGACAAAGCAAGTTATGCGTGATCCTGTTATGTTAGAAAATGGGCAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGACGCAAACTAGTTTGTCCTTTGACTCTGCAAGAACTAAAAAGCACAGAACTGAATCCCAGTATAGCTTTGCGTAACACCATTGAAGAGTGGACTGCAAGGAATGAAGCTGCACAGCTGGACATGGCTCGGAGGTCATTGAATATGGGCAGTCCTGAAAATGAAACTTTACAGGCTTTACATTATGTCCGACACATTTGCCAAAGAAGTCAATCCAATAAGCATAATATCCGCAGTGCAGGGCTTATACCTATGATCGTTGACATGTTGAAGAGCAGCAGCCGCAAGGTTCGTTGTAGAGCTTTGGAAACCCTAAGAATTGTTGTAGAAGAAGACGATGAGAATAAGGAATTGCTGGCCGAAGGAGACACTGTGCGCACAGTAGTAAAATTTCTTTCTCATGAGCTCTCTAAAGAAAGAGAGGAAGCTGTCTCTTTGCTTTATGAGCTCTCAAAATCTGAAACTCTATGTGAGAAAATAGGTTCAATCAATGGGGCTATTCTCATACTAGTTGGAATGACAAGCAGCAAATCAGAACATATTTTGACTGTTGAGAAGGCTGATAGAACATTGGAGAATTTGGAAAAGTGTGAGAATAATGTGCGTCAGATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGACACAGCTTCTTGAAGGGCCGCCTGAAACCAAATTGTCCATGGCTGGATACCTTGGTGAGCTGGTTTTGAATAATGATGTAAAGGTCCTTGTTGCTAAAACTGTAGGTTCATCTCTGATCAATATAATGAAAAGTGGTGATATGCAGTCCAGAGAAGCTTCACTGAAAGCTCTTAATCAGATATCATCCTGTGAGCCAAGCGCAAAGGTTTTGATAGAGGCTGGAATACTTTCGCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCTGCTTCCCATGCGGCTGAAAGAAATCTGTGCTACAATCCTTGCCAATGTTGTGAACTCAGGAGATGACTTTGACTCCATCCCATTCGGACCTGATCACCAAACTCTGGTGTCGGAGGACATAGTTCATAATCTACTCCATCTTATTAGCAACACTGGTCCAGCTATTGAATGCAAACTTCTCCAAGTCCTTGTTGGACTAACTAGTTCTCCAACTACTGCACTGAGTGTTGTTGCGGCTATCAAAAGCTCTGGCGCCATTATTAGTCTAGTTCAATTTATTGAGGCTCCACAGAAAGATTTGCGCTTAGCTTCTATAAAACTCCTTCAATATCTGTCTCCCCACATGGGTCAGGAACTAGCTGATGCATTACGTGGTTCAGTTGGACAGCTGGGCAGTCTAATTAAAGTCATATCAGAAATTACAGGAATCAGTGAAGAGCAGGCAGCAGCTGTTGGCCTTCTAGCTGATCTACCTGAGAGGGATTTGGGGCTCACAAGACAGATGCTAGATGAAGGTGCCTTTCAGCTGGTCTACTCTAGAGTGATTGCCATCAGGCAGGGGGAGATCAGAGGCAGCCGCTTTGTGACACCATTTCTAGAAGGGCTTGTGAAGATTCTTGCGAGGGTTACGTATGTATTGAGTGATGAGCCTGATGCCATTACATTCTGCCGTGAGCATAGTCTTGCTGCACAGTTTATTGAACTGCTTCAGGCCAATGGACTTGATAATGTACAGATGGTTTCTGCTACAGCTTTGGAGAATCTATCGCAAGAATCAAAGAATTTAACAAAATTGCCTGAAGTGCCATCTCCTGGTTGTTGTGCCTCAATATTTACATGCTTTAGCAAACAGCCCGTTCTAACAGGATTGTGTAGGCTTCACCGAGGGTTGTGTTCATTGAAAGAAACATTTTGTCTCTTGGAAGGGCAGGCAGTGCGTAAGTTAGTAGCTCTACTGGACCACACAAATGTGCATGTGGTTGAGGCAGCACTTGCAGCCTTATCTACATTGTTAGATGATGGAGTTGATATTGAACAGGGGGTGATGGTGCTGTGTGAGGCAGAGGGAATTAAGCCTGTACTTGATGTGTTACTTGAGAAACGGACAGATAATCTGAGGAGGAGGGCAGTTTGGGCAGTTGAGAGAGTCTTGCGAACTGATGATATAGCCTGTGAAGTATCTGGTGATCAAAATGTGAGTACTGCGCTTGTTGACGCTTTTCAGCATGGTGACTATCGAACTCGGCAGATTGCTGAGCGTGCTCTCAAGCATGTGGATAAGATTCCCAACTTCTCAGGAATCTTTCCAAACATGGGATAG 2565 0.4409 MVPRFVSCTPSTPSPFPSTVFQFQLFSMGRDEIFRERLLDMMAASWDGSNDPGSQSDESYHFERLHIEPIYDAFVCPLTKQVMRDPVMLENGQTFEREAIEKWFKECKESGRKLVCPLTLQELKSTELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENETLQALHYVRHICQRSQSNKHNIRSAGLIPMIVDMLKSSSRKVRCRALETLRIVVEEDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEHILTVEKADRTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLSMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGDMQSREASLKALNQISSCEPSAKVLIEAGILSPLVNDLFAVGPNLLPMRLKEICATILANVVNSGDDFDSIPFGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSSPTTALSVVAAIKSSGAIISLVQFIEAPQKDLRLASIKLLQYLSPHMGQELADALRGSVGQLGSLIKVISEITGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVYSRVIAIRQGEIRGSRFVTPFLEGLVKILARVTYVLSDEPDAITFCREHSLAAQFIELLQANGLDNVQMVSATALENLSQESKNLTKLPEVPSPGCCASIFTCFSKQPVLTGLCRLHRGLCSLKETFCLLEGQAVRKLVALLDHTNVHVVEAALAALSTLLDDGVDIEQGVMVLCEAEGIKPVLDVLLEKRTDNLRRRAVWAVERVLRTDDIACEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2923 854 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 59 850 - -
Dere05g2923 854 Gene3D - 614 843 IPR011989 -
Dere05g2923 854 SUPERFAMILY ARM repeat 498 842 IPR016024 -
Dere05g2923 854 SMART arm_5 713 754 IPR000225 GO:0005515
Dere05g2923 854 SMART arm_5 631 672 IPR000225 GO:0005515
Dere05g2923 854 SMART arm_5 758 800 IPR000225 GO:0005515
Dere05g2923 854 SMART arm_5 388 433 IPR000225 GO:0005515
Dere05g2923 854 SMART arm_5 180 220 IPR000225 GO:0005515
Dere05g2923 854 SMART arm_5 307 347 IPR000225 GO:0005515
Dere05g2923 854 SMART arm_5 222 262 IPR000225 GO:0005515
Dere05g2923 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 156 IPR013083 -
Dere05g2923 854 SUPERFAMILY ARM repeat 161 485 IPR016024 -
Dere05g2923 854 SMART Ubox_2 73 141 IPR003613 GO:0004842|GO:0016567
Dere05g2923 854 Gene3D - 157 357 IPR011989 -
Dere05g2923 854 ProSiteProfiles U-box domain profile. 69 148 IPR003613 GO:0004842|GO:0016567
Dere05g2923 854 Pfam U-box domain 72 146 IPR003613 GO:0004842|GO:0016567
Dere05g2923 854 Coils Coil 297 317 - -
Dere05g2923 854 CDD RING-Ubox_PUB 71 128 IPR045210 -
Dere05g2923 854 Gene3D - 358 527 IPR011989 -
Dere05g2923 854 SUPERFAMILY RING/U-box 63 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2923 Dere-ChrDere05 39711645 39716103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2923 43 854 U-box Gene Family AT1G76390 65.233 0.0 1042