Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2921 ATGTTCATGGCGGAATTGCATGGCTACCTAAAAGGCTTACATATGGCGTTAGATTTGGAGTTGCGTGATATCATTGTGGAGTTAGACAATAAGCTTCTTGTCCGGGCTTTATTTTCCCAGGAGTTGTGTCCTGAGTGGAATGGGCATCGGCTATTACAGTATGCGACTGATGTCCAACCAAGATTTCATTCCTGTTCTGTTTCCTGGGTACCAAGAACTGCTAATCAGCAAGAGATGGTCTCCGTGAAACCTGTGAGCGCTAAGAACCCTAACAATGTGTACCACATCGGAGGCCTCCAAGTGGAATTTCCTTACCAGCCATACGGTTCTCAGTTTGCATTTATGGGTAGAGTCATCTCTACGCTTAACCAAGCTCAGAGAGAAGGCAATTGTCATGCGTTGCTCGAGTCTCCAACCGGTACTGGCAAATCCCTTTCCCTTCTCTGTTCCTCTCTCGCTTGGCAGCAGAACTATAAATTGAGTAAACAGCATTCGAATCCCTCTCAACTGAAGCCCGCTCCAGAAGCAACGACCGACCCTCTTGTCCACGGTGGTGGATTTCTTCCCGATGAGGTTTCTCCGACATCAGAAAATATGGAGCTGCCAGAGTCTGAGGCTAACAACAAGAAGCAGAAGAAAAAGGCCGCACCCACTATATATTACGCCTCGAGGACACACTCACAAATTTCTCAAGTAATTCGTGAATTGCGGAAAACTGCTTATAGGGTGCCTATGGCTGTGCTGGCATCACGGAAGCATTATTGCACCAATAAACATATACTATCCAAAGATAATATTGATGAAGAATGTAAACTACTTTTGAAAGATCAGACAATAGGATGTCCAGAATTCAAAAACACACATAAAGTCAAAGGTCATCCATCCCTTCAAAATGGGGGATGTAATGAGGTGCATGATATAGAAGATCTTGTGAAAGTTGGACAAGCAGTGAAAGGTTGCTCCTATTATGCAGCTCGTTCTATGTCAGATGATGCACAGTTGGTATTTTGTCCCTATAACTATGTTATCAATCCAGTCATTCGTTCAGCAATGGATGTGGATATTAAAGGAGCCATTGTGATTCTTGATGAAGCCCACAATATAGAGGATATCACTCGTGATGCTGGTAGTTTCGATATTGAAGAAGAGGTTTTGGATAAGCTGCTAATGGAGCTCCAACAACTTTGTTCTGTCAATGCTCTGATATACCAACCTTTGTATGAAATGGCACAGGGTCTTATGAGTTGGATAGAACAGAAGAAAAATAAACTAGAAAAGCGTGATTTTCAGCACTATATGTCTTGTTGGACTGGGGAAAAAGCTTTAACAGAGCTCCAAGAAGCAAATATTTCACTACAGTGCTTCCCTATCTTGTTAGAATGTGCTACCAAGGCAATCAGAGTTGCTTCAGATTTGGAGTCAGATGTACCACATTTAAGTGGCATGTCAGTAATAACACTGGAAGGCTTATTCTCTTCACTAACTTATTTCTTCTCGAGAAATGGTACTCACATGCTGGATTACCAGCTTGCTCTGCAGCGAAATGTTAAGAAAGATGCTGGAAGAGCTTTTGGAAATTGGACCCACACTTTAAGTTTGTGGTGCTTAAATCCAGCAGTTGTGTTTACAGACATTGCCAATCTTTCTTTGTCAGTGATTTTGACTTCTGGGACACTGTCACCAATGAATTCCTTTTCATCTGAACTAGGAGTTCAGTTTAATACTAGTCTGGAAGCTCCACATGTAATTGATGTTGACTCACAGGTGTGGCCTGCTATAATCTGTACTGGTCCTGGTAATTATCCTTTGAATGCAAGTTATAAGACTGCAGATGGATATGCATTCCAGGATGCAGTTGGAAAATCTTTAGAGGAAATCTTCAAGATTGTTCCAGGTGGCTGTCTTGTTTTTTTTCCAAGTTATAAATTGATGGAGAAATTATGCAATCGTTGGTCCGAAACAGGTCAATGGTCTCGACTAAATGCAGAGAAGTCGCTTTTTGTTGAACCAAGAGGAGGAAGCCAAGATGATTTTGAACTTGCTTTAAAAGGGTACTATGACTCAATTGATCTCAGCAATAAACCTACTTTGGGCAGGAAAAAAAGGATTAAGAAGATTGGCTTTAATAACTTCCATACAGTCGAATCCCAAAAAAATTTGAAGAAAGGAGGAGCTGCTTTACTTGGTGTTTGTCGAGGAAAGGTTTCTGAAGGAATTGATTTTTCTGATGATAATGCTAGAGTGGTTATTATAGTTGGCATTCCGTTTCCCAACATAAACGATATTCAAGTTGCACTAAAGAAGAGGTATAATGACACATACAAATCGTCCAAAAATCTTTTGGGTGGAAATGAGTGGTACTGCCACCAAGCATTTCGAGCTTTGAATCAAGCGGCAGGTCGTTGTATACGACATCGGTTTGATTATGGAGCGGTCATCTTATTGGATGAACGTTTTCGGGAAGAAAGAAATAGAGCATTCATTTCAAAGTGGTTAAGAAAAACCTTAAGGGTGTATGACAGTTTTGACTTGTCTATGGAGGGACTGAGATCATTCTTCGAGGATGCCAAGGAGCAGTTTGGCCTGAATGTCACTCAAAAATTGGGCTTAAACAGGGAAGGTGACCAAACCAAGGATCAGAATAAGGGGTTTATAAGAAAGACATATAAGGAACTGGTCAAGTCTGATAATGGTGGTAAGAAAGAAGTAGCAATGATCAAGGATGACAGCTCTTTCCCCATACTGAGATCTCAAGATCTTATTGAGAGTCAGCGATCGGTGCATAAGAATAGTAACTCATACAATTGTAAAGACTGTTTTGACCCAGAAGGCTGCAATCAGGCAGAATCAAGCTTCACTGGGGCATTATCTGTGGCAGTTACACATGAAGATACCTCCCTTGTCAAGGAAACTTCTTGTATAGATGGCAGCAGTGACCCTGCTAGTCCTGGTTGCTGTTCTAAGGATAACTACTCTAGTTCCACCATAGTTGAGGCCTCTTCTGAATTACGTGATCAGTTATCATTTCTTCCAGTTTCTCTAACTAATGGAAGTAAAGCTTCTTCAACAGTTCAGTCTTCTATATCAGTTACTCCTGAAAAAAATGTTACTGCAAACAGCTGCCATATTGTGGAAGCAGATTCATCTTTGAATAGGAGTGTTAATTCTCACACCCAGAAAAGGAGAAAGTCCATGGACACACCATTTATAAGCCTTATTGAGGAAGAAAATTATATTGCACCCTGTGCCAGCATTCCTGCAAGGCACACTGGGAGCTCGGTGAATGTTAATGAGGCAACTAGTGGAAAAGATTTTGGTTTTCACAAAATTTCAAAGTCAAAGTCACATCAGTTACAGACAAGTAATCTGACTAGTTCATTTTTATTAACTGTTCCTCTCATGGAGAGAAGGTTACAGATATTTTGCTCACTTTGCAAAAACCCTTTGGGTCGACCTGAGAACCATCTATATATTACATGTTCTTTGACTTCATTATCAAAAGTTCACTTAAGATCTCTTTTGAAACACAGACTGAAAGTTTATGGTGATAATACTTTAAGTGTACCAGTTGTTATAACTGGCACTTCATATGTCAATCAACGTATCTGCGATAGAATTAGTGGAAGTGCTCCAGAGCAGGGTATTTGGTGCCAAGAAGATGGGTGTGTCTTCAGGAGTATCTTCTGTCCCTTCTGCAATAACCTGAACAATTTGCTTGGAGTACAGGTCATGGCAACTAATGCATCAAATAGTCATTTACTTGACAAGATATTGTTTTGCTTTGAATTTTTGGAAGTTAAGGATTTTGAGGAACCAAGGAATGAGGCTTCAAAGGAGGTGGATTTGTTGCCAGTTAGTGGCTCTGGTATGGATGAAATTGCTGTCTTGAATTCCATTGACAAATTTTCTTACAAGTCAAGAGTCTTGAAGACCAGAAAATCAAAGTCGACTGCAGCTGCTCCTAAATTATCCATGAGATTATCAACTCGCATGCAATGCTTTTATGTTGATGATCTGCATGCTTTGCCTCTCAAAGGCACGTGTATTATGTCAGCTGGTTTTGTGTACAAAGATGTAGATCTAGTTTGGCATCCGAATCCAGTTACTGACAAATTGGAGGGCTTTAAACTAATGATGGCAACAACGGTGAGGACTGAGGGTAGGGGTGACGAGGCAACCAGTGGTAGTGAACTTGCTTATGAGAGTTGTGTCACCGTCGAAGCACTTTGTAACGTGGGCCCTGATAATGGCTATATGATTTGCATCAGAGGGTTTCAATACTCTTAA 4287 0.408 MFMAELHGYLKGLHMALDLELRDIIVELDNKLLVRALFSQELCPEWNGHRLLQYATDVQPRFHSCSVSWVPRTANQQEMVSVKPVSAKNPNNVYHIGGLQVEFPYQPYGSQFAFMGRVISTLNQAQREGNCHALLESPTGTGKSLSLLCSSLAWQQNYKLSKQHSNPSQLKPAPEATTDPLVHGGGFLPDEVSPTSENMELPESEANNKKQKKKAAPTIYYASRTHSQISQVIRELRKTAYRVPMAVLASRKHYCTNKHILSKDNIDEECKLLLKDQTIGCPEFKNTHKVKGHPSLQNGGCNEVHDIEDLVKVGQAVKGCSYYAARSMSDDAQLVFCPYNYVINPVIRSAMDVDIKGAIVILDEAHNIEDITRDAGSFDIEEEVLDKLLMELQQLCSVNALIYQPLYEMAQGLMSWIEQKKNKLEKRDFQHYMSCWTGEKALTELQEANISLQCFPILLECATKAIRVASDLESDVPHLSGMSVITLEGLFSSLTYFFSRNGTHMLDYQLALQRNVKKDAGRAFGNWTHTLSLWCLNPAVVFTDIANLSLSVILTSGTLSPMNSFSSELGVQFNTSLEAPHVIDVDSQVWPAIICTGPGNYPLNASYKTADGYAFQDAVGKSLEEIFKIVPGGCLVFFPSYKLMEKLCNRWSETGQWSRLNAEKSLFVEPRGGSQDDFELALKGYYDSIDLSNKPTLGRKKRIKKIGFNNFHTVESQKNLKKGGAALLGVCRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVALKKRYNDTYKSSKNLLGGNEWYCHQAFRALNQAAGRCIRHRFDYGAVILLDERFREERNRAFISKWLRKTLRVYDSFDLSMEGLRSFFEDAKEQFGLNVTQKLGLNREGDQTKDQNKGFIRKTYKELVKSDNGGKKEVAMIKDDSSFPILRSQDLIESQRSVHKNSNSYNCKDCFDPEGCNQAESSFTGALSVAVTHEDTSLVKETSCIDGSSDPASPGCCSKDNYSSSTIVEASSELRDQLSFLPVSLTNGSKASSTVQSSISVTPEKNVTANSCHIVEADSSLNRSVNSHTQKRRKSMDTPFISLIEEENYIAPCASIPARHTGSSVNVNEATSGKDFGFHKISKSKSHQLQTSNLTSSFLLTVPLMERRLQIFCSLCKNPLGRPENHLYITCSLTSLSKVHLRSLLKHRLKVYGDNTLSVPVVITGTSYVNQRICDRISGSAPEQGIWCQEDGCVFRSIFCPFCNNLNNLLGVQVMATNASNSHLLDKILFCFEFLEVKDFEEPRNEASKEVDLLPVSGSGMDEIAVLNSIDKFSYKSRVLKTRKSKSTAAAPKLSMRLSTRMQCFYVDDLHALPLKGTCIMSAGFVYKDVDLVWHPNPVTDKLEGFKLMMATTVRTEGRGDEATSGSELAYESCVTVEALCNVGPDNGYMICIRGFQYS 1428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2921 1428 Pfam Helicase C-terminal domain 623 834 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Dere05g2921 1428 Gene3D - 2 79 IPR036397 GO:0003676
Dere05g2921 1428 Gene3D - 600 845 IPR027417 -
Dere05g2921 1428 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 96 855 IPR045028 -
Dere05g2921 1428 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 97 435 IPR014013 GO:0005524
Dere05g2921 1428 SMART Cxpdneu3 641 821 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Dere05g2921 1428 FunFam Fanconi anemia group J protein homolog 600 847 - -
Dere05g2921 1428 Gene3D - 107 423 IPR027417 -
Dere05g2921 1428 CDD SF2_C_XPD 587 819 - -
Dere05g2921 1428 Pfam DEAD_2 221 384 IPR010614 GO:0003677|GO:0003678|GO:0005524
Dere05g2921 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 815 IPR027417 -
Dere05g2921 1428 SMART deadxpd 99 399 IPR006554 GO:0003678|GO:0016818
Dere05g2921 1428 MobiDBLite consensus disorder prediction 163 214 - -
Dere05g2921 1428 Pfam Reverse transcriptase-like 2 76 IPR002156 GO:0003676|GO:0004523
Dere05g2921 1428 CDD RNase_H_like 2 76 IPR044730 -
Dere05g2921 1428 FunFam Fanconi anemia group J protein-like isoform E 208 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2921 Dere-ChrDere05 39686645 39704026 Transposed