Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2920 ATGCAAGATCAACACCAAGAACAGAGCTCCAATGGAGTCGGCGGGCTGTACGTCAAAGTGATGACTGATGAGCAAATGGAGGTGCTGAGGAAGCAGATCTCTGTGTACGCCTCCATATGCGAACAGCTTGTTGAGATGCATAAGTCCATCACTGCTCACCAAGACCTCGCAGGACTGAGGCTGGGTAATTTATACTGTGATCCACTGATGGTATCTTCTGGACACAAGATACCTGCGAGGCAGCGCTGGACTCCAACCCCTCTCCAGCTTCAGATACTGGAGCGTATTTTTGACCAAGGCAACGGCACTCCAAGCAAGCAGAAGATCAAAGAGATAACCATTGAACTGGGGCACCATGGCCAAATTTCTGAGACCAATGTCTACAATTGGTTTCAAAACAGAAGAGCTCGATCCAAACGCAAGCAATTTGCTCCCCCCCAGAATCATGTTGAATCAGAACTAGACACCGAAATTGAGTCTCCAAAGGACAAAAAGACAAGACCCGAAACCTTTCAAGTTCAACCCTTTGACTATGACAATTCTCCACCGCAAAGGGCCAAAGATCTATACATCCACAGTCCTGACTTAGGATTTGAGCAGTTGATGAGTAAAATAGAAGTTGCAGGCTGCTATAGCCCTTATTTTCAAGGAGAAATATATGAAATGGCTGGTTAA 675 0.4607 MQDQHQEQSSNGVGGLYVKVMTDEQMEVLRKQISVYASICEQLVEMHKSITAHQDLAGLRLGNLYCDPLMVSSGHKIPARQRWTPTPLQLQILERIFDQGNGTPSKQKIKEITIELGHHGQISETNVYNWFQNRRARSKRKQFAPPQNHVESELDTEIESPKDKKTRPETFQVQPFDYDNSPPQRAKDLYIHSPDLGFEQLMSKIEVAGCYSPYFQGEIYEMAG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2920 224 CDD homeodomain 80 142 IPR001356 GO:0003677
Dere05g2920 224 PANTHER WUSCHEL-RELATED HOMEOBOX 13 4 199 IPR044559 GO:0003700
Dere05g2920 224 Gene3D - 81 145 - -
Dere05g2920 224 ProSiteProfiles 'Homeobox' domain profile. 76 141 IPR001356 GO:0003677
Dere05g2920 224 SUPERFAMILY Homeodomain-like 79 142 IPR009057 -
Dere05g2920 224 SMART HOX_1 78 145 IPR001356 GO:0003677
Dere05g2920 224 MobiDBLite consensus disorder prediction 139 169 - -
Dere05g2920 224 MobiDBLite consensus disorder prediction 152 169 - -
Dere05g2920 224 Pfam Homeodomain 80 140 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2920 Dere-ChrDere05 39684949 39686195 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2920 16 224 Wox Gene Family AT4G35550 53.814 6.58e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Dere05g2920 Homeodomain 4.5e-18 CL0123