Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2915 ATGGGCTTCGGACGCTTAATATCTCCGCCTTTCGGCGTCTCAAGTGACCTAACCTACTCATTCCACTTTCCTTTCCCTGCCCCTCCTTCTACACCCCTGACACCAATTCCTCCTCCTGTTTTCGTCATGAAAGGTGCCAAATCGAAGTCTGAATCTAAGAAACCCAATGCGAAGCTTGCCGTGAATAAGAAAGGTAGCGCCGCCACCAAGGCGGCGGGGAGATCGAGTAAGGGCAAGGCAGCCAAAGATCCTAACAAGCCGAAGAGACCACCCAGTGCCTTCTTCGTCTTCATGGAGGAATTTAGGAAGCAGTTCAACAAAGAACATCCTGAAAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCTGGGGCAAAATGGAAGTCTATGTCTGACGCTGAGAAAGCACCGTATGCAGCGAAGGCAGAGAAACGAAAGGCTGAGTATGAGAAGAATATGAAGGCGTATAACAAGAAACAGGCTGAAGGTCCCGACGCTGGAGATGATGAAGAATCGGAAAAGTCAATGTCTGAGGTGAATGATGAGGACGATGCAGACGAGGAGGGAAGTGGCGAGGAGGAGGATGACGAGTAG 591 0.5008 MGFGRLISPPFGVSSDLTYSFHFPFPAPPSTPLTPIPPPVFVMKGAKSKSESKKPNAKLAVNKKGSAATKAAGRSSKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPENKAVSAVGKAAGAKWKSMSDAEKAPYAAKAEKRKAEYEKNMKAYNKKQAEGPDAGDDEESEKSMSEVNDEDDADEEGSGEEEDDE 196
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2915 196 MobiDBLite consensus disorder prediction 107 196 - -
Dere05g2915 196 CDD HMG-box_AtHMGB1-like 88 148 - -
Dere05g2915 196 MobiDBLite consensus disorder prediction 44 93 - -
Dere05g2915 196 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 43 191 IPR031061 -
Dere05g2915 196 Gene3D High mobility group box domain 70 170 IPR036910 -
Dere05g2915 196 MobiDBLite consensus disorder prediction 136 164 - -
Dere05g2915 196 Coils Coil 138 158 - -
Dere05g2915 196 Pfam HMG (high mobility group) box 87 156 IPR009071 -
Dere05g2915 196 SMART hmgende2 86 157 IPR009071 -
Dere05g2915 196 MobiDBLite consensus disorder prediction 165 196 - -
Dere05g2915 196 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 87 156 IPR009071 -
Dere05g2915 196 SUPERFAMILY HMG-box 76 161 IPR036910 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere05g2915 Dere-ChrDere05 39625840 39627591 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere05g2915 HMG_box 1.1e-23 CL0114