Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2910 ATGTCCGCTGGCAAAGCAACGCCGTCGACGAACTCGTTGGAAGACGCTGCATTTATAGACTCACAAACCCTAAAAACAAATCGAAGATCGATTCTTAAAAAAAACCATAATGAGGGGAAAAAAGAAATCGGTCATCGTCGCACAGATGCCAGCAGAATCCAAATTGATAATGCTCCTCGATCTACCTCTTCCTCAGGGAGTAGGCGGTCCAAGGCTCATGCCAATAATGGTGAGAATGGAAGCAAGGGAGTATCCTCAGATGGGAAGGGGAAGAGTGGCGTCAGCCCAAAAAGCGGTGCAGCCCGTAGTTACACTTTTCGTGAACTTGCAGCTGCAACCAGGGGTTTCAAGAATGTCAATTTGATTGGGGAAGGGGGTTTTGGAAGGGTTTACAAAGGTCGTCTCGACACAGGCCAGCTTGTTGCTGTCAAACAATTAAATCACGATGGTCAACAAGGTTTTCAGGAATTCATAGTGGAGGTTCTCATGTTAAGCCTTCTACACCATTCAAATCTTGTTACCTTGTTTGGTTACTGCACTGACGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCTATGGGTAGCGTGGAAGATCATCTTTTTGATTTAAAACCAAACAAAAAGCTGCTAAGTTGGAGTGACCGGATGAAGATTGCTGTTGGAGCTGCAAGAGGCCTCGAGTACCTTCATTGTAAAGCAAATCCACCTGTTATTTATCGTGACTTGAAATCCGCAAATATCCTATTAGACAATGACTTCAACCCGAAACTCTCAGATTTTGGGCTTGCTAAGCTTGGTCCTGTTGGAGACAATACTCATGTCTCAACCAGAGTGATGGGAACATATGGCTACTGTGCCCCAGAGTATGCCATGAGTGGCAAATTAACTCTTAAATCTGATATATACAGCTTTGGTGTGGTTTTGATGGAGTTGATTACTGGAAGAAGGGCAATAGATGTCAGTAAGAAGCCAGGGGAGCAAAACTTAGTTGCATGGTCTCGCCAGTTTCTAAAGGATCGGAGGAAGTTTGTACAGTTGGTTGATCCTTGTCTGGAAGGACACTTCCCCTTACGCTGTTTGCATCATGCTATTGCTATTACTGCGATGTGTCTTCAGGAGCAACCTAATTTTCGTCCAATTATTGGTGATATTGTTGTAGCACTGGAGTATTTGCATTCTCAGAGTAAAATCTCAGAAGTCCATGAAGGTGGGGAACATAGTCTACCTCCTCAATCACCTTCACAACTGGGCAAGCATTTTTCAGATAAATCAAATTCTAGATTGACGACAACTTCTGCCTAA 1305 0.4368 MSAGKATPSTNSLEDAAFIDSQTLKTNRRSILKKNHNEGKKEIGHRRTDASRIQIDNAPRSTSSSGSRRSKAHANNGENGSKGVSSDGKGKSGVSPKSGAARSYTFRELAAATRGFKNVNLIGEGGFGRVYKGRLDTGQLVAVKQLNHDGQQGFQEFIVEVLMLSLLHHSNLVTLFGYCTDGDQRLLVYEYMPMGSVEDHLFDLKPNKKLLSWSDRMKIAVGAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLMELITGRRAIDVSKKPGEQNLVAWSRQFLKDRRKFVQLVDPCLEGHFPLRCLHHAIAITAMCLQEQPNFRPIIGDIVVALEYLHSQSKISEVHEGGEHSLPPQSPSQLGKHFSDKSNSRLTTTSA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2910 434 FunFam Serine/threonine-protein kinase PBS1 192 406 - -
Dere05g2910 434 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Dere05g2910 434 MobiDBLite consensus disorder prediction 54 92 - -
Dere05g2910 434 MobiDBLite consensus disorder prediction 1 28 - -
Dere05g2910 434 Gene3D Transferase(Phosphotransferase) domain 1 192 408 - -
Dere05g2910 434 MobiDBLite consensus disorder prediction 1 99 - -
Dere05g2910 434 MobiDBLite consensus disorder prediction 400 434 - -
Dere05g2910 434 SMART serkin_6 116 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2910 434 Gene3D Phosphorylase Kinase; domain 1 88 191 - -
Dere05g2910 434 SUPERFAMILY Protein kinase-like (PK-like) 94 391 IPR011009 -
Dere05g2910 434 MobiDBLite consensus disorder prediction 31 53 - -
Dere05g2910 434 ProSiteProfiles Protein kinase domain profile. 116 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2910 434 Pfam Protein kinase domain 117 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2910 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Dere05g2910 434 MobiDBLite consensus disorder prediction 409 434 - -
Dere05g2910 434 PANTHER OS07G0668900 PROTEIN 69 398 - -
Dere05g2910 434 CDD STKc_IRAK 122 390 - -
Dere05g2910 434 FunFam probable serine/threonine-protein kinase RLCKVII 89 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2910 Dere-ChrDere05 39602033 39606119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2910 45 392 Glycoside Hydrolase AT3G07070 58.166 8.38e-146 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Dere05g2910 Pkinase 3.4e-47 CL0016