Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2909 ATGGGAAACTGCCTTGTACATAAGCGCAAGCCCGCCACAATCTCCAACCATGAACCAAGCACTCCTCATGCTTCAGTAATCAAGTACAGGAATGAAAAGGAACTGGATTCAGAGGGAACAAGCAATAAAGAAGAGCAAAGTCTCAGAGGGAAGATTGTGACGCCAAATCTGAAAATATTCAGTTTGGATGAGTTGAAGAGTGCCACAAGAAACTTTAGACCCGACACAGTGGTGGGGGAGGGTGGTTTCGGAAGAGTCTTCAAGGGATGGATCGACCACAACACCTTGAAGCCCTCAAAAGTGGGCGTTGGAATCCCCGTCGCCGTCAAGAAATCTAATCCTGATAGTCTCCAAGGCTTAGAGGAATGGCAGAGCGAGGTAATGTTCTTGGGCAAGTTCTCTCATCCGAACCTGGTGAAGCTAATTGGCTACTGCTGGGAGGACAATCAGTTCCTGCTTGTCTACGAATACATGCAGAAGGGCAGCTTGGAAAACCACCTCTTTGGAAGAGGACCCGAACCACTTGCGTGGGACATAAGGCTTAAAATAGCCATAGATGCAGCTCGAGGCCTGGCTTTCCTGCACACCTCTGAGAAGACTGTTATTTACCGGGACTTCAAGTCCTCCAACATTTTGCTCGATGGGGACTTCAATGCGAAGCTTTCAGATTTCGGTCTGGCAAAGTTTGGCCCCGTCAATGGTAGATCCCACGTAACCACGCGAGTCATGGGCACTTATGGTTACGCAGCCCCCGAGTACTTGGCCACCGGTCATCTCTATGTGAGAAGCGATGTATACGGATTTGGAGTAGTGCTGCTGGAAATGTTGACAGGGTTTGCAGCGCTGGACCCAAATAGGCCGGCGGGACAACATAGCTTGGTGGATTGGACCAAACCGTATCTTGGCGAGAAGAAGAGGCTGAAAAGGATAATGGACCCAAATCTGGGCCAACAATATTCCCTAACGGCTGCATTTCAAGTGGCCCAGCTCATCCTCAAATGTCTAGAATCTAATCCAAAGAATCGACCCTCCATGGAAGAGGTTTTGAGAACTTTAGAGAAAGCCCGCCGCATCAGATATAAGCCCAAGCCCAAGCCCAAGAAGCCCAACTTCGTCCATCAAAAGTAA 1128 0.4911 MGNCLVHKRKPATISNHEPSTPHASVIKYRNEKELDSEGTSNKEEQSLRGKIVTPNLKIFSLDELKSATRNFRPDTVVGEGGFGRVFKGWIDHNTLKPSKVGVGIPVAVKKSNPDSLQGLEEWQSEVMFLGKFSHPNLVKLIGYCWEDNQFLLVYEYMQKGSLENHLFGRGPEPLAWDIRLKIAIDAARGLAFLHTSEKTVIYRDFKSSNILLDGDFNAKLSDFGLAKFGPVNGRSHVTTRVMGTYGYAAPEYLATGHLYVRSDVYGFGVVLLEMLTGFAALDPNRPAGQHSLVDWTKPYLGEKKRLKRIMDPNLGQQYSLTAAFQVAQLILKCLESNPKNRPSMEEVLRTLEKARRIRYKPKPKPKKPNFVHQK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2909 375 PIRSF ILK 1 365 - -
Dere05g2909 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Dere05g2909 375 Gene3D Phosphorylase Kinase; domain 1 41 157 - -
Dere05g2909 375 PANTHER OS01G0588500 PROTEIN-RELATED 40 354 - -
Dere05g2909 375 ProSitePatterns Protein kinases ATP-binding region signature. 78 111 IPR017441 GO:0005524
Dere05g2909 375 CDD STKc_IRAK 78 354 - -
Dere05g2909 375 Pfam Protein tyrosine and serine/threonine kinase 76 352 IPR001245 GO:0004672|GO:0006468
Dere05g2909 375 MobiDBLite consensus disorder prediction 1 24 - -
Dere05g2909 375 FunFam Serine/threonine-protein kinase BIK1 38 157 - -
Dere05g2909 375 SUPERFAMILY Protein kinase-like (PK-like) 52 353 IPR011009 -
Dere05g2909 375 ProSiteProfiles Protein kinase domain profile. 72 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2909 375 MobiDBLite consensus disorder prediction 356 375 - -
Dere05g2909 375 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 158 365 - -
Dere05g2909 375 Gene3D Transferase(Phosphotransferase) domain 1 158 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2909 Dere-ChrDere05 39593938 39595941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2909 31 352 Glycoside Hydrolase AT3G07070 46.154 4.61e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere05g2909 PK_Tyr_Ser-Thr 1.5e-44 CL0016