Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2907 ATGGGAGATGGTATTTTGACACCTGTGGCCATGCTGGAAGCACCGCTTGAGTCCTCCATGGATTTCGACTATGTGGACCAACTTTTCTTAGATGGTTGCTGGTTGGAAACCGCTACCAATGGATCTGATTTCCTGCCAAATCCTCTCTCTAGTTCGAATCCTCTCTTGGACTCTTCGTTTTCATGGCCTGCCATGCACACTAGTGGGAACCAAGAGGGAAGGCAAAGTCCATTGTTTATTGAATCCCAGGAAGCTCCTCTCACAACTCAACCGCTTAGCCGGGACATAATTAATCAGTCTGAATTTGAACATCAATCAGTTGAAGCTGCTGAAGTGGTAAGAACGTGGTGGATTGGACCCACTGCTAATCCAGGCCCTACATCTTCTGTACTGGAGAGACTAATCAGGGCCCTTATGTATATCGAGGAGTTCAACAAAGACAAAGATGTGCTGATACAAATATGGGTTCCAGTTGATAGAGGGGAAAGGCGGATTCTAACAACTAGAGATCTCCCGTTCTCCCTTGAAGCTGGATGTCCAAATCTTGCAACGTACCGAGAAATCTCAGTGAAATATGAGTTTTCAGCTGAGGAGGAGTCAAAGGGGTTGGTCCCAGGATTGCCTGGTCGAGTTTATCTGGGAAAGGTTCCGGAGTGGACTCCTGATGTTCGGTTTTTCACAAGTGATGAATACCCAAGAGTTGACTATGCTCAACACTGTAATGTGCGAGGAACTTTAGCCCTTCCGATCTTTGACCAAGGCAGCAGAATTTGCTTGGGTGTTATTGAGGTTGTCACGACTAATCAGCAGATCAAATATCGTCCCCAACTTGAAAGTGTGTGCAAGGCATTAGAGGCTGTTGATCTTAGGAGCTCCAAACTTTCAAGTATGCAGAATGTGGAGGGATGGAAAAGGTCCTATGAAGCTGCAATACCTGAGATTCAAGAGGTGTTCAGATCCACATGTGAAATGCACAAACTGCCATTGGCTCAAACTTGGGTCCCATGCTTCCAACAAGGCAAAGAGGGATGCCGCCACTCCGATGATAATTATTTACATTGTATATCTCCTGTGGAGCATGCTTGCTATGTTGGTGATGACCATGTGCGAGGTTTCCATGAGGCTTGCTCCGAGCATCACTTGTTTAAAGGTCAAGGCATCACCGGGGAGGCTTTTCTGACCAATCAACCATGCTTCTCGACTGATGTAACTTCCTTGGGCAAGGTAGAGTATCCACTGTCTCACCATGCAAGGATGTTTAAATTGAGGGCTGCTGTTGCTATCCGCCTGCGGAGCATCCATAGTACTAAAGATGATTTTGTCCTAGAGTTCTTCTTGCCTGTGTCTTGCACGGACAGTGATGAACAGAAGAAGATGCTTACTTCGTTGTCCATGATTATACAAAAGGTTTGCCATAGCGTACGGGTCATAACAGATGAAGAGTTGGAGGAGGAAACTAATTTGTTAGTTGATGAAGTGATAGTCCCTGCAGATAGTAGGAGATCTGCAAATAGAATGGAGTTTAAACAGAGTCGGATGGTTGCCTTATCCAGCACCCAAGAAAAATCAAGTGAAACAATACTCGGTACAAAATTCTCTGACCTAAGGCAGCATCAAGAAGGCTCTTTTTCGAAAGGAAATCTTGACTGTGAGGGGGAGTTTCCTACTCTTGGAGAGAATAACTTATACAGTGCGCGTGTAAGTAAAACAGGAGAGAAAAGACGAGTCAAAGCAGATAAAAATGTCACACTCCAAGTTCTTCGGCAATATTTTGCTGGAAGCCTAAAAGATGCTGCAAAAAATATTGGGGTTTGTACTACAACCTTGAAAAGGATATGCCGGCAACATGGGATAAAGCGTTGGCCTTCTCGGAAGATAAAAAAGGTTGGTCACTCCCTGCAGAAACTTCAACTTGTTATAGACTCAGTTCAAGGTGTCTCTGGTGGTTTTGAAATAGACTCCTTGTACACAAGCATCCCAAAATTGGCTTCTTCGAATATTTTCTCACCTTGTAACAAAAGCGATCAGCAAAACCCATCAAGCACACAGCCGGAACCTGATTTGTTGAGCACAGAGGCTGCTGCATCAAAATCACCTTCATCTTCATGCAGTCAGAGTTCCATTTTAAGCCATTCCTGTTCCAACATATCAGAGCAACAACCTCTCACGAGAAATCTGGCCATCAGCAAAAATGGTATAGCTGGAGAAGATCCTGCTGATGGTCTGTTGAAGAGGATTAGAAGTGAAGCAGAGCTAAAATGCTCGAGCCAAGATAGACCAAAGCTCTTGCCAAGATCCCAAAGCCAGGAAGCACTTGGCGATGACTCAAAAACTGACTATTACGTGCCATTGTTGAAAAGCAGTAGTCACAAAATACCCCAAAAAGAGGATGCTCACAGAGTGAAAATCACATACGGAGATGAGAAAGCCCGATTTCGGATGCCTAAGAATTGGGGATATGAAGATCTTTTGCAGGAAATAGCTGGGCGATTCAACATAAATGATATTAGCAAATTCGATGTCAAGTATTTGGATGATGACTCGGACTGGGTTTTATTAACCTGTGATGCTGATCTGCAGGAGTGTATTGATGCGGGTATATCTTCTGGGAGCAATACCATCAAACTTTGCCTCAAAGTATCCAATCGTTTTATGCGAGGAAGTGAGGTCCTTCTTGATTGTAAACTATCGCATGGATCGTCAAGCATCCAATCTTAG 2718 0.4426 MGDGILTPVAMLEAPLESSMDFDYVDQLFLDGCWLETATNGSDFLPNPLSSSNPLLDSSFSWPAMHTSGNQEGRQSPLFIESQEAPLTTQPLSRDIINQSEFEHQSVEAAEVVRTWWIGPTANPGPTSSVLERLIRALMYIEEFNKDKDVLIQIWVPVDRGERRILTTRDLPFSLEAGCPNLATYREISVKYEFSAEEESKGLVPGLPGRVYLGKVPEWTPDVRFFTSDEYPRVDYAQHCNVRGTLALPIFDQGSRICLGVIEVVTTNQQIKYRPQLESVCKALEAVDLRSSKLSSMQNVEGWKRSYEAAIPEIQEVFRSTCEMHKLPLAQTWVPCFQQGKEGCRHSDDNYLHCISPVEHACYVGDDHVRGFHEACSEHHLFKGQGITGEAFLTNQPCFSTDVTSLGKVEYPLSHHARMFKLRAAVAIRLRSIHSTKDDFVLEFFLPVSCTDSDEQKKMLTSLSMIIQKVCHSVRVITDEELEEETNLLVDEVIVPADSRRSANRMEFKQSRMVALSSTQEKSSETILGTKFSDLRQHQEGSFSKGNLDCEGEFPTLGENNLYSARVSKTGEKRRVKADKNVTLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGVSGGFEIDSLYTSIPKLASSNIFSPCNKSDQQNPSSTQPEPDLLSTEAAASKSPSSSCSQSSILSHSCSNISEQQPLTRNLAISKNGIAGEDPADGLLKRIRSEAELKCSSQDRPKLLPRSQSQEALGDDSKTDYYVPLLKSSSHKIPQKEDAHRVKITYGDEKARFRMPKNWGYEDLLQEIAGRFNINDISKFDVKYLDDDSDWVLLTCDADLQECIDAGISSGSNTIKLCLKVSNRFMRGSEVLLDCKLSHGSSSIQS 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2907 905 MobiDBLite consensus disorder prediction 670 703 - -
Dere05g2907 905 CDD PB1_NLP 799 878 IPR034891 -
Dere05g2907 905 MobiDBLite consensus disorder prediction 755 774 - -
Dere05g2907 905 Gene3D - 794 878 - -
Dere05g2907 905 ProSiteProfiles PB1 domain profile. 798 881 IPR000270 GO:0005515
Dere05g2907 905 ProSiteProfiles RWP-RK domain profile. 568 649 IPR003035 -
Dere05g2907 905 SUPERFAMILY CAD & PB1 domains 788 880 - -
Dere05g2907 905 PANTHER PROTEIN NLP8 87 888 IPR045012 GO:0003700
Dere05g2907 905 MobiDBLite consensus disorder prediction 760 774 - -
Dere05g2907 905 Pfam PB1 domain 799 880 IPR000270 GO:0005515
Dere05g2907 905 SMART PB1_new 798 881 IPR000270 GO:0005515
Dere05g2907 905 Pfam RWP-RK domain 581 629 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2907 Dere-ChrDere05 39558036 39561507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2907 20 882 NLP Transcription Factor Family AT1G20640 48.225 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dere05g2907 PB1 2e-17 CL0072