Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2904 ATGATAAGCCGTGGATCGATGGCATTGGATGGCGAGGAAAAAGGAGGTGACACAGTGGAGGGGGGGAATGTGTTCGACGAATCAATTCGGCCGGAGGATTTCGATGTGGTGGAAGAAATTCAGAGAGTGATTAAATCGGTAGCTCAGTTTGGGGAATATCGAAGGACCCAGAGGAAAGAAAGTCACAACCTCGCGAGGCGTTTGAAAATCTTGTTGCCGCTTGTCGAAGAAATTCGGGACCTCGGTCCCCATATTCCAGACAAGGGCGTAGCATGGTTGAATGATTTGAAGGATGCTCTCCTTCTTGCCAAGGAATTGCTGAAAATGTGTAGCGAGGGCAGCAAGTTACACCTGGCACTCGAGAGCGAAGCGGTTATGATCAATTTTCAATCTGTCTACGGAAAATTAAGCAAAGTGTTCGATGCTTTGCCTAGTGAAGAATTAGAAATATCAGATGAAATGAAAGAACAGCTTGAGCTAATGTGCGTCCAACTCAGGCGAGCAAAGAGGCGAACGGATACCCAAGACATGGAACTTGCAATGGATATGATTGTGGTATCCTCCAAAGATCACGATCGGAATGCTGACAGCGCTATCGTAGAAAGGCTTGCACAGAAGCTCGAGCTTCATACTGTGGAGGATCTTAAGATAGAAACTGTAGCTGTAAGGAACCTTGCTAAAGAAAGAAGAGGAAAAAATGCAGAGAGTACCCAGCAAATAATTGACCTTCTTAACAAATTCAAACAAATTTCAGGCTCGGAAGAAACCAATGTTCTGGATGAACCTGTCATGACCCGAATGCTTGACAAGTGCACATCTTTGGTCATCCCTCATGAATTTCTCTGCCCAGTAACCCTAGAAATTATGACCGATCCTGTTATTATCGCGAGCGGCCAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCGAGTCCAATCGTAATACCTGCCCGAAGACTAGGCAAACTCTGGCTCACCTGTCATTAGCACCAAACTACGCCCTGAAAAATTTGATTTCAGTGTGGTGTGAGGAAAACAACTTTAAACTGCCTAAGAAGGAAACTTGTTCAAGTGAAGAAAGCTGCTTAACCAATCCCAAAGAGGAAATACCGTCTTTGGTTGAGAACCTATCGTCAATGCATCTAGAAGTGCAGAGAAAGGCTGTGAAGAAGATACGTCTGATATCAAAGGAGAATTCCGAGAACAGGGTTTTGGTGGCAGAGCATGGAGGCATACCGCCATTGGTGCAGCTGCTGTCCTATCCAGATTCCAAAATACAGGAGCATGCTGTGACTGCGCTTCTAAATTTGTCAATTGATGAGGGTAACAAGAAACTAATATCCAGAGAAGGAGCAATTCCAGCCATTATAGAAGTATTGGAAAGTGGAAGCATTGAGGCTAAGGAAAATTCTGCAGCAGCTCTATTTAGCTTGTCAATGCTGGATGAGAACAAAGAAATTGTGGGTGTATCGAATGGCATTCCCCCGTTGGTAGAATTATTGCGGAATGGGACAATCAGAGGGAAAAAAGATGCTGTCACAGCTCTGTTCAGTTTATCTCTGAACCATGCGAACAAGGGTAGGGCCATCAGTGTGGGCATTGTGACGCCCTTACTCCAATTGCTCAAGGACACTAACTTGGGCATGATTGATGAGGCCCTCTCCATCCTATTACTTCTTGCCTCAAATCCAGATGGACGGCAAGAGATTGGGCAGCTCTCTTTTATTGAAACTCTTGTTGACTTCATCAAAGAAGGAACCCCCAAGAACAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGGGTTCCAAAAATTCTAACCTCATACTGGCAGCACTTCAGTTTGGTGTGTATGAGCATTTAATTGAGATCAAACAAAGTGGAACAGATAGAGCAAAGAGGAAAGTAGATGCACTTTTACACCTCATGAGCAAGAGCGAGCATCTTTAA 1950 0.4446 MISRGSMALDGEEKGGDTVEGGNVFDESIRPEDFDVVEEIQRVIKSVAQFGEYRRTQRKESHNLARRLKILLPLVEEIRDLGPHIPDKGVAWLNDLKDALLLAKELLKMCSEGSKLHLALESEAVMINFQSVYGKLSKVFDALPSEELEISDEMKEQLELMCVQLRRAKRRTDTQDMELAMDMIVVSSKDHDRNADSAIVERLAQKLELHTVEDLKIETVAVRNLAKERRGKNAESTQQIIDLLNKFKQISGSEETNVLDEPVMTRMLDKCTSLVIPHEFLCPVTLEIMTDPVIIASGQTYERESIEKWFESNRNTCPKTRQTLAHLSLAPNYALKNLISVWCEENNFKLPKKETCSSEESCLTNPKEEIPSLVENLSSMHLEVQRKAVKKIRLISKENSENRVLVAEHGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKKLISREGAIPAIIEVLESGSIEAKENSAAALFSLSMLDENKEIVGVSNGIPPLVELLRNGTIRGKKDAVTALFSLSLNHANKGRAISVGIVTPLLQLLKDTNLGMIDEALSILLLLASNPDGRQEIGQLSFIETLVDFIKEGTPKNKECAASVLLELGSKNSNLILAALQFGVYEHLIEIKQSGTDRAKRKVDALLHLMSKSEHL 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2904 649 Gene3D - 486 648 IPR011989 -
Dere05g2904 649 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Dere05g2904 649 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Dere05g2904 649 SMART arm_5 399 439 IPR000225 GO:0005515
Dere05g2904 649 SMART arm_5 522 562 IPR000225 GO:0005515
Dere05g2904 649 SMART arm_5 481 521 IPR000225 GO:0005515
Dere05g2904 649 SMART arm_5 440 480 IPR000225 GO:0005515
Dere05g2904 649 SMART arm_5 563 603 IPR000225 GO:0005515
Dere05g2904 649 Pfam U-box domain 276 346 IPR003613 GO:0004842|GO:0016567
Dere05g2904 649 FunFam RING-type E3 ubiquitin transferase 354 649 - -
Dere05g2904 649 Gene3D - 363 485 IPR011989 -
Dere05g2904 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 350 IPR013083 -
Dere05g2904 649 Coils Coil 151 171 - -
Dere05g2904 649 FunFam RING-type E3 ubiquitin transferase 33 146 - -
Dere05g2904 649 SUPERFAMILY RING/U-box 276 350 - -
Dere05g2904 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 451 493 IPR000225 GO:0005515
Dere05g2904 649 SUPERFAMILY ARM repeat 369 643 IPR016024 -
Dere05g2904 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515
Dere05g2904 649 MobiDBLite consensus disorder prediction 1 25 - -
Dere05g2904 649 FunFam RING-type E3 ubiquitin transferase 272 349 - -
Dere05g2904 649 CDD RING-Ubox_PUB 277 329 IPR045210 -
Dere05g2904 649 PANTHER U BOX DOMAIN-CONTAINING 58 644 - -
Dere05g2904 649 Gene3D - 32 146 IPR036537 GO:0007166
Dere05g2904 649 MobiDBLite consensus disorder prediction 10 25 - -
Dere05g2904 649 Pfam Armadillo/beta-catenin-like repeat 482 520 IPR000225 GO:0005515
Dere05g2904 649 Pfam Armadillo/beta-catenin-like repeat 399 438 IPR000225 GO:0005515
Dere05g2904 649 Pfam Armadillo/beta-catenin-like repeat 441 479 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2904 Dere-ChrDere05 39533476 39536084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2904 36 649 U-box Gene Family AT5G42340 63.681 0.0 748