Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2885 ATGGGCTGTTGTGTATCTTCGTTTTCCAAGGATTCTATTCCCCAAAACAGCCATCATTTCGATTATCACAAAAACAACATCCACAATCTTCCTTCTTCCTCCAACGGCGCCGATAATACCGCTGCTGCCGGTGACTTCCCGCCTTTCTCGGAGTTCTCCCTTACCGACCTAAAGGCTGCCACCAACAACTTCAGCCCCGATCACATCGTCTCCGAGAGCGGCGAGAAAGCCCCCAATGTCGTTTACAAAGGTCGCCTCCAGAACCACAACCGCCGTTGGATTGCCGTCAAGAAATTCACTAAATTGGCCTGGCCAGACCCTAAGCAGTTCGCGGATGAAGCTTTGGGTGTTGGAAAATTAAGACACAGAAGGCTTGCCAATTTGATTGGCTATTGTTGTGATGGGGATGAGAGACTTCTTGTTGCAGAGTACATGCCCAACGACACCCTCGCCAAACATCTGTTTCACTGGGAGAATCAGACAATTGAGTGGGCCATGCGATTAAGGGTTGCTCTAAACATTGCCGAAGCATTAGATTACTGTCATAGTGAAGGTCATCCATTGTACCATGACTTGAATGCTTACAGAGTTCTCTTTGATGAGAATGGCGATCCCCGGCTTTCATGTTTTGGTTTGATGAAGAACAGCAGAGATGGGAAAAGTTATAGCACAAATCTTGCTTATACACCTCCTGAATATCTGAGAAATGGGAGGGTGACTCCTGAAAGTGTCATCTTCAGCTTTGGAACTGTGTTATTGGATCTTCTAAGTGGCAAGCATATCCCTCCAAGTCATGCTCTTGATATGATAAGGGGCAAGAATAACCTTCTCCTTATGGATTCACATTTGGAGGGAAACTTTTTAACTGATGAAGCAACTGTGGTTTTGGATCTTGCCTCACAATGTTTGCAGTATGAACCTAGGGAGCGGCCCAAGACTAAGGACCTTGTTATCAAACTCTCTCCACTACAAAATAAACCTGACGTTCCATCATATGTAATGCTTGGAATTCCAAAGCACGAGGAAGCACCTCCTACGCCGCAGCATCCTCTTTCTCCAATGGGTGATGCTTGTTCTCGTATGGACCTTACAGCTATCCATCAGATTTTGTTAATGACACACTACAGAGATGATGAAGGGACTAATGAGTTATCTTTCCAAGAGTGGACCCAGCAAATGAGGGATATGTTGGAGGCACGAAAGCGTGGTGATTTGGCATTTCGTGACAAGGATTTTAAGACTGCAATTGAGTGTTACTCCCAGTTTATTGATGTGGGAACAATGGTATCCCCGACGGTGTATGTACGGAGGAGTCTTTGCCATCTGCTGTGTGATCAACCAGATGCTGCTTTGAGAGATGCAATGCAAGCACAATGTGTGTATCCTGAGTGGTCCACAGCATTTTACATGCAGGCCGTTGCTCTTTCCAAATTAAAGATGGACAAGGATGCTGCTGACATGCTCAATGAGGCTGCTGCCCTTGAAGACAAAAGACGGGGCAAAGGCTCTTCCTGTTCTTGA 1521 0.4596 MGCCVSSFSKDSIPQNSHHFDYHKNNIHNLPSSSNGADNTAAAGDFPPFSEFSLTDLKAATNNFSPDHIVSESGEKAPNVVYKGRLQNHNRRWIAVKKFTKLAWPDPKQFADEALGVGKLRHRRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALNIAEALDYCHSEGHPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKNNLLLMDSHLEGNFLTDEATVVLDLASQCLQYEPRERPKTKDLVIKLSPLQNKPDVPSYVMLGIPKHEEAPPTPQHPLSPMGDACSRMDLTAIHQILLMTHYRDDEGTNELSFQEWTQQMRDMLEARKRGDLAFRDKDFKTAIECYSQFIDVGTMVSPTVYVRRSLCHLLCDQPDAALRDAMQAQCVYPEWSTAFYMQAVALSKLKMDKDAADMLNEAAALEDKRRGKGSSCS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2885 506 Gene3D Transferase(Phosphotransferase) domain 1 146 336 - -
Dere05g2885 506 FunFam probable serine/threonine-protein kinase At4g35230 39 144 - -
Dere05g2885 506 Gene3D Tetratricopeptide repeat domain 394 502 IPR011990 GO:0005515
Dere05g2885 506 SUPERFAMILY TPR-like 399 496 IPR011990 GO:0005515
Dere05g2885 506 SUPERFAMILY Protein kinase-like (PK-like) 47 329 IPR011009 -
Dere05g2885 506 FunFam probable serine/threonine-protein kinase At4g35230 394 503 - -
Dere05g2885 506 Coils Coil 477 497 - -
Dere05g2885 506 Gene3D Phosphorylase Kinase; domain 1 40 144 - -
Dere05g2885 506 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 22 499 IPR045845 GO:0004672|GO:0009742
Dere05g2885 506 FunFam probable serine/threonine-protein kinase At5g41260 146 337 - -
Dere05g2885 506 ProSiteProfiles Protein kinase domain profile. 67 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2885 506 Pfam Protein kinase domain 80 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2885 Dere-ChrDere05 39392241 39396532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2885 52 347 Glycoside Hydrolase AT3G07070 34.985 1.44e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Dere05g2885 Pkinase 6e-27 CL0016