Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2883 ATGGAAATCGATGCAAGAAGTGGGTTCTGCAAGTCAAACTCCATCTTCTACAGTAAGCGTAAGCCTGTGGCGCTACCTCAAAACCACTCTCTGGACGTCACCACTTTCATCTCCTCCCGCGCCCACCATGGCAAGCTTGCTTTCATCGATGCTGCCACTGGTCGCCACTTCACATTCCCACAACTCTGGCGAGCCGTCGATGCCGTCGCCACCTCTCTCTACGACTTCGGTATTCGAAAGGGGCACGTCGTCCTCCTTCTTTCCCCTAACTCCATTTATTTTCCCGTTGTCTGCCTGGCCGTCATGTCCCTTGGAGCTATAATAACCACTACCAACCCTCTCAACACCACTGGCGAAATTGCCAAGCAAATCTCCGATTCCAAACCGATCATCGCTTTCACAATTCGGCCTCTCTTTCCCAAAATCACCGCAATTTCAAACATACCAATCGTTCTCATGGACGAAGATGCGACCGCCCCGATTACCGAACCCAAAATATTGACTACGCTAAGGGAGATGATGAAGAAGGAACCCAGTGCGAGCCGAGTCAGGGATCGAGTTAACCAAGACGATACGGCGACGCTGCTATACTCGTCTGGTACCACGGGTCCAAGTAAAGGCGTGGTCTCGTCGCATCGGAATCTGATGGCTATGGTCCAGATCGTTTTGGGTCGATTCAATATGGATAAGGAGGAGACCTTCATATGCACTGTTCCTATGTTCCATATATACGGTTTAGCAGCGTTTGCAACGGGTCTTCTGGCTTCGGGATCAACTATAGTGGTGCTATCCAAGTTCGACATGGACGACATGCTTTCAGCGATCCAGAAGTACCGTGCAACGTACCTGCCGCTGGTCCCGCCCATACTTGTGGCGATGATGAACGGAGCGGATGCGATAAAGGCGAAGTACAACTTGAGTTCACTACATTCGGTGCTGTCGGGTGGGGCTCCACTGAGCAAGGAGGTGATAGAGGGGTTTGTGGAGAAGTACCCTCATGTGACAATTCTTCAGGGTTACGGGTTGACCGAATCAACGGGGGTCGGGGCATCCACGGACTCGTTGGAGGAGAGTAGGAGGTACGGTACGGCTGGGCTGTTGTCACCGAGCACGGAGGCCAGAATTGTGGACCCTGAAACGGGAGAAACTTTGCCGGTTAATCGGACGGGTGAGCTCTGGCTCAGAGGTCCCACCATCATGAAAGGTTATTTCAGTAACCAGGAAGCAACTACCTCAACCCTTGATTCAGAGGGATGGTTAAGAACAGGGGATATTTGCTATATTGATAACGATGGACATATCTTCATCGTTGATAGGTTGAAAGAGCTCATTAAATACAAGGGATATCAGGTCCCACCAGCAGAACTCGAGGCCTTGTTGCTTACTCATCCTGCAATTTCTGATGCTGCTGTCATACCATTCCCAGACAAGGAGGTTGGGCAGTTTCCAATGGCATACGTAGTAAGGAAAACTGGAACTAATATATCTGGAAAGGAAATTATGGATTTTGTGGCAGCACAGGTGGCTCCATATAAAAGAATTCGAAGAGTGGCATTTATTTCTTCAATACCCAAAAACCCATCCGGAAAAATTCTTAGGAAGGATCTCATCAAGCTTGCCACATCTAAACTTTGA 1635 0.4948 MEIDARSGFCKSNSIFYSKRKPVALPQNHSLDVTTFISSRAHHGKLAFIDAATGRHFTFPQLWRAVDAVATSLYDFGIRKGHVVLLLSPNSIYFPVVCLAVMSLGAIITTTNPLNTTGEIAKQISDSKPIIAFTIRPLFPKITAISNIPIVLMDEDATAPITEPKILTTLREMMKKEPSASRVRDRVNQDDTATLLYSSGTTGPSKGVVSSHRNLMAMVQIVLGRFNMDKEETFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMDDMLSAIQKYRATYLPLVPPILVAMMNGADAIKAKYNLSSLHSVLSGGAPLSKEVIEGFVEKYPHVTILQGYGLTESTGVGASTDSLEESRRYGTAGLLSPSTEARIVDPETGETLPVNRTGELWLRGPTIMKGYFSNQEATTSTLDSEGWLRTGDICYIDNDGHIFIVDRLKELIKYKGYQVPPAELEALLLTHPAISDAAVIPFPDKEVGQFPMAYVVRKTGTNISGKEIMDFVAAQVAPYKRIRRVAFISSIPKNPSGKILRKDLIKLATSKL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2883 544 Gene3D - 442 543 IPR045851 -
Dere05g2883 544 Gene3D - 13 441 IPR042099 -
Dere05g2883 544 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 441 - -
Dere05g2883 544 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Dere05g2883 544 Pfam AMP-binding enzyme 40 446 IPR000873 -
Dere05g2883 544 SUPERFAMILY Acetyl-CoA synthetase-like 39 542 - -
Dere05g2883 544 CDD 4CL 25 536 - -
Dere05g2883 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 538 - -
Dere05g2883 544 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Dere05g2883 544 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2883 Dere-ChrDere05 39375906 39378570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2883 3 544 Monolignol Biosynthesis Gene Families AT1G20500 66.728 0.0 749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2883 05 39375906 39378570 Dere05g2883 05 39375906 39378570 ECH