Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2876 ATGGAATGTAATCTACTAAATACCACATTATCCGAGTTTGAGTACAATTCCTCTGCCCAACCAACGCTATCATTTGGTCAACCACAGACTCAGCTATCGTGTAGAATCACCATGGAAGCAAAATTATCAATCAACAGGGAAGGACAACCTATACAATGCAAAGCGGCGGTCTGTCGGAAGGCCGGAGATCCGTTAATTATGGAGGACATTATTGTAGCGCCGCCCATGTCTCGTGAAGCTCGGATTCGCATCATATGCACATCTCTCTGTCACAGCGACATCACATTCTGGAGGATGAAGGATCCTCCTGGAATTTGCCCACGAATTCTGGGTCACGAGGCAGTCGGGGTTGTGGAAAGTGTAGGAGAAGATGTCAATGAAGTTAAAAAAGGAGATACAGTTCTCCCAATTTTCCTGCCAGAATGTGGGGAGTGTACAGACTGCAAATCAAAGAAGAGCAACCTTTGTTCAAAGCTGTCTTTTACGGTGTCTCCTTGGATGCCTCGACATGGTACCAGCAGATTCACTGATCTAAACGGGAACATCATACACCACTTTCTGTTCGTCTCAAGTTTCAGCGAGTACACTGTGGTTGACGTTGCCAATTTGACTAAGATTGATCCTACAGTTCCTCCCAACAAGGCATGCCTCCTCAGTTGCGGTGTATCTACAGGGGTGGGTGCTGCTTGGAGGACAGCTGATGTGGAGGCAGGCTCTACGGTTGCTATTTTTGGACTGGGCTCCATTGGATTAGCAGTTGCAGAGGGAGCTAGACTCTGTGGTGCTGCAAGGATTATAGGGGTGGATGTGAACCCTCACAAATTTGAAATAGGAAAGAAGTTTGGACTCACAGACTTTGTCAACCCTGGAGATTGTGGGGACAAACCTATTAGCCAGGTCATCATCGAGATAACTGGTGGGGGAGCTGATTATTGCTTTGAATGCGTTGGGATGGCATCGTTGGTGCATGAAGCGTACGCTTCTTGTCGAAAGGGTTGGGGAAAAACGATAGTTGTGGGAGTTGACCCTTCAGGGTCCATGTTGAGTCTTAAATCCGCTGAGGTCCTTCATAGTGGAAAAAGCCTTATGGGATCTTTATTTGGAGGACTCAAACCCAAGTCTCATATTCCGATTCTCCTTGAACGTTACATGGACAAGGAACTGCAATTGGATGATTTTGTCACGCATGAGGTGGACTTTAAGGACATAAATAAAGCTTTTGATTTACTGCTTGAAGGACAGAGTCTTCGATGTGTGATTTGGATGGAGAGATAA 1275 0.4612 MECNLLNTTLSEFEYNSSAQPTLSFGQPQTQLSCRITMEAKLSINREGQPIQCKAAVCRKAGDPLIMEDIIVAPPMSREARIRIICTSLCHSDITFWRMKDPPGICPRILGHEAVGVVESVGEDVNEVKKGDTVLPIFLPECGECTDCKSKKSNLCSKLSFTVSPWMPRHGTSRFTDLNGNIIHHFLFVSSFSEYTVVDVANLTKIDPTVPPNKACLLSCGVSTGVGAAWRTADVEAGSTVAIFGLGSIGLAVAEGARLCGAARIIGVDVNPHKFEIGKKFGLTDFVNPGDCGDKPISQVIIEITGGGADYCFECVGMASLVHEAYASCRKGWGKTIVVGVDPSGSMLSLKSAEVLHSGKSLMGSLFGGLKPKSHIPILLERYMDKELQLDDFVTHEVDFKDINKAFDLLLEGQSLRCVIWMER 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2876 424 FunFam S-(hydroxymethyl)glutathione dehydrogenase 225 365 - -
Dere05g2876 424 Gene3D - 225 365 - -
Dere05g2876 424 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 210 386 IPR036291 -
Dere05g2876 424 Gene3D - 56 417 - -
Dere05g2876 424 Pfam Zinc-binding dehydrogenase 249 369 IPR013149 -
Dere05g2876 424 SUPERFAMILY GroES-like 47 236 IPR011032 -
Dere05g2876 424 Pfam Alcohol dehydrogenase GroES-like domain 79 202 IPR013154 -
Dere05g2876 424 FunFam Alcohol dehydrogenase 6 56 237 - -
Dere05g2876 424 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 111 125 IPR002328 GO:0008270|GO:0016491
Dere05g2876 424 PANTHER ALCOHOL DEHYDROGENASE 48 420 - -
Dere05g2876 424 SUPERFAMILY GroES-like 373 421 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2876 Dere-ChrDere05 39355830 39361126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2876 78 223 Monolignol Biosynthesis Gene Families AT4G37970 27.333 1.95e-09 56.6