Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2875 ATGGCAGGCCTGAGCTTTAACGATGGTCCCAGTGCTAGCAATGTTTCTGCAGAATGTTCTGATTCAACTGTTCAGCTCAATATCAAGACTTTAGATTCCCACGTCTACAGTTTTCAAGTGGATAGAAATATGCCAGTTTCGTTGTTGAAGGAGAAAGTAGAGAATGAAATTGGTGTTCCAGTTGGTCAGCAACGGTTAATATTCAGGGGGAAAGTCTTAAAGGATGATCATGTTCTTGCTGAGTATCACGTTGAGACTGGGGATACATTGCATTTAGTTGAAAGGCAACTAAACCAATCACAGACTCCTGGTACTAGTTCTGGTGAGATGACTGGTACAAATGGAAATCGAGGAAATGATGCTAGCTCTGGGGCATCTCGTAATCGGGTTGGACAAATTTCACATAGTGTTGTTCTGGGGACCTTTAATGTGGGGGACCAAGGTGAAGGCATTGTTCCTGACCTTAGTCGGGTTGTTGGGGCGTTTTTAAACTCTATCGGAATTGGTGGGCAGAGCACCACTGGTGTTACAAATGTTCCACAGTCTTCTTCTTCTGGCCCTTCTGGGAATGAAGGTGGGGGAATGCATGCTGGAAATCAGAACCAAGCAGGAAATCAAGCACAGTCAGGACAGGCATTTCCCAGCCAACCATTTCAATCTTTGCCTCAAGTAGTTCAGATTCCTCTGGCTGCGGGATCCATAACCGTTCCATCACTCAATGCACCAATTCCTCATTCACTGGATACTCTTTCTGAGTTTATAAATCTAATGGAGCAGACGCTATCACAAAATGGTTATCAACCAAATTTGTTGTCAACGAATGCCGGAGAGCAAACACAAGTGGAATTGACCTCTAACCCACAAGGATTGCCAACAGTTGAAACATTAAGCAGGGTCTTGCATCGTGCAGAACGGCTGCTCAGTGGCCGCGCTATTTCTGCACTATCTCATATTGCAGGACGGTTGGAGCAAGAGGGAACTACTTCTGATCCAACTATAAGGGGTCAAATACAGTCAGAGTCAATGCAAATAGGACTTGCCATGCAACATTTGGGTGCATTTCTACTTGAGCTTGGCCGTACAATCTTGACACTGCGTATGGGACAGTCTTCTGCTGAATCTGCTGTCAATGCTGGGCCAGCAGTTTATATTTCACCATCAGGACCTAATCCTATAATGGTGCAGCCTTTCCCACTTCAAACAAGCTCCCTCTTTGGTGGTTCTGTTCCTTCTTCAACTCCTACAACATTTGGTACAGTTGGCGTTGGAAATGCCCCTCGGAATGTAAACATACATATACATGCTGGTACTTCTCTTGCACCAATTGTTACACCAATTGGTTTGAGGCCAAATAATGGGGATGGGACACCAAATGAGCGTCATAGTGGTCTTGGTTCTGGTGATTCAGGTTCAACTCGTGTTTTACCTGTGAGAAATATCATTGCAGCAGCTGTTCCTGCACGCCCTCCTGGTGCTGGGACTAACAGTGGCACACAACAAGGTCTTGGTGTTCCTACTTCACAGCCGTCTGCTGATTCAGTTTCATTATCATCTGTTTTAGCTGAAGTCAATTCTCGCATTAGAAACCTTGTAGGAAATACCCAAGGAGATAACTCAGTTCCGTCAGGTCAAGTGGAATCAACCAACCAGGACTTGTCTGTTGGTTCTGAATCACGACCTACTCTGGGAAATGAACAGCGTGATACCATGGAGGTGAGTGTTGCTGGGGCTGCCAGTGTTTCTTCAGTTGCTTGCACATCCGAAAGTGGTGTACATAAGCCCCAACCTGAGGCAGTCCAGACTTCTAACAATGGGGAGAGAGATGTTTTGAGCTGCAAATTTGTTTCATCTTCCAATCAAGATTCAGTAAGTTGGTCAAGTGGAGAAACAAAAGCGAAGTCAGAAAATGTACAAGAAAACACTCAATCTGCTGGTGGAAAACAACATGTAACTGAAAGTGCCAAGGCTGCCCCACTTGGATTGGGAATGAGTGGTTTGGAGCGTAAGAGGAGAACAAGGCTTCAACATCCTGTAAGTAAAGGTGCTGATGATGGATCAGCCAGTTCTTCTGGTAATCAAAATCAGCAAGCTAGAACAAGTGGTCAACATATATTGCAAGCTCTTGCAAGTCATGGAACTTCTATGAACCAGGGAAATGTTAATGGGCCATCCCAAGGGTCCTCTTCTCCTGGTGCTGGCCAGATTGACGTGGCTGGTGTTATGTCTCAGGTTTTGCATAGCCCTGCTTTGAATGGTTTGTTGTCAGGGGTTTCACAGCAAACTGGAGTTGGCTCACCTGATGTCTTGAGGAACATGTTGCAGCAGTTCACACAGAGCCCACAGATGAGGAATACTGTCAATCAAATTGTCCAACAGGTTGGCAGTCAGGATATGGGGAATATTTTTGCTGGAATGGACAGAGAGCAAGGTAGTGGCATTGACTTGTCAAGGATGCTTCAACAGATGATGCCCATTGTATCTCAAGCTCTCGGTGGTGGAACTCATTCTCAGCCATTCTCTGCTGCAGGGAGGGAACCCGAGGCACCTTACAGAGATGGAATCCGTAGTAGAGATGAAAATTCTGATCATCAAAGTCTACAGACCAATCTTCAAAGATTGGTGGAGAGAATTGAGCAACTGAGTCCACGGGTAGATGTCTTCCGTGCTGCGGTTGAAAATGCTATCCAGCTATATGGAAGTGGGAACTCTTATGATGCTCTTCTAGATGAGTTGTGCAACGATGAGGGTCTTGCCAGCGAATATGTGGAGATGTTACGACATGATGTAAGTCGGCGGCTGAAGGGTGATTCTGGGCAGGACAAGTTTTAA 2829 0.456 MAGLSFNDGPSASNVSAECSDSTVQLNIKTLDSHVYSFQVDRNMPVSLLKEKVENEIGVPVGQQRLIFRGKVLKDDHVLAEYHVETGDTLHLVERQLNQSQTPGTSSGEMTGTNGNRGNDASSGASRNRVGQISHSVVLGTFNVGDQGEGIVPDLSRVVGAFLNSIGIGGQSTTGVTNVPQSSSSGPSGNEGGGMHAGNQNQAGNQAQSGQAFPSQPFQSLPQVVQIPLAAGSITVPSLNAPIPHSLDTLSEFINLMEQTLSQNGYQPNLLSTNAGEQTQVELTSNPQGLPTVETLSRVLHRAERLLSGRAISALSHIAGRLEQEGTTSDPTIRGQIQSESMQIGLAMQHLGAFLLELGRTILTLRMGQSSAESAVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGSVPSSTPTTFGTVGVGNAPRNVNIHIHAGTSLAPIVTPIGLRPNNGDGTPNERHSGLGSGDSGSTRVLPVRNIIAAAVPARPPGAGTNSGTQQGLGVPTSQPSADSVSLSSVLAEVNSRIRNLVGNTQGDNSVPSGQVESTNQDLSVGSESRPTLGNEQRDTMEVSVAGAASVSSVACTSESGVHKPQPEAVQTSNNGERDVLSCKFVSSSNQDSVSWSSGETKAKSENVQENTQSAGGKQHVTESAKAAPLGLGMSGLERKRRTRLQHPVSKGADDGSASSSGNQNQQARTSGQHILQALASHGTSMNQGNVNGPSQGSSSPGAGQIDVAGVMSQVLHSPALNGLLSGVSQQTGVGSPDVLRNMLQQFTQSPQMRNTVNQIVQQVGSQDMGNIFAGMDREQGSGIDLSRMLQQMMPIVSQALGGGTHSQPFSAAGREPEAPYRDGIRSRDENSDHQSLQTNLQRLVERIEQLSPRVDVFRAAVENAIQLYGSGNSYDALLDELCNDEGLASEYVEMLRHDVSRRLKGDSGQDKF 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2875 942 MobiDBLite consensus disorder prediction 492 511 - -
Dere05g2875 942 MobiDBLite consensus disorder prediction 486 511 - -
Dere05g2875 942 MobiDBLite consensus disorder prediction 713 732 - -
Dere05g2875 942 MobiDBLite consensus disorder prediction 619 701 - -
Dere05g2875 942 MobiDBLite consensus disorder prediction 170 216 - -
Dere05g2875 942 MobiDBLite consensus disorder prediction 829 865 - -
Dere05g2875 942 MobiDBLite consensus disorder prediction 713 734 - -
Dere05g2875 942 MobiDBLite consensus disorder prediction 99 129 - -
Dere05g2875 942 MobiDBLite consensus disorder prediction 682 701 - -
Dere05g2875 942 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Dere05g2875 942 FunFam Large proline-rich protein BAG6 16 109 - -
Dere05g2875 942 SUPERFAMILY Ubiquitin-like 18 97 IPR029071 -
Dere05g2875 942 SMART ubq_7 24 95 IPR000626 GO:0005515
Dere05g2875 942 MobiDBLite consensus disorder prediction 848 862 - -
Dere05g2875 942 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 940 - -
Dere05g2875 942 CDD Ubl_ubiquitin_like 26 93 - -
Dere05g2875 942 MobiDBLite consensus disorder prediction 586 605 - -
Dere05g2875 942 MobiDBLite consensus disorder prediction 447 472 - -
Dere05g2875 942 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Dere05g2875 942 Gene3D - 12 108 - -
Dere05g2875 942 PRINTS Ubiquitin signature 34 54 IPR019956 -
Dere05g2875 942 PRINTS Ubiquitin signature 76 97 IPR019956 -
Dere05g2875 942 PRINTS Ubiquitin signature 55 75 IPR019956 -
Dere05g2875 942 MobiDBLite consensus disorder prediction 531 566 - -
Dere05g2875 942 MobiDBLite consensus disorder prediction 455 472 - -
Dere05g2875 942 MobiDBLite consensus disorder prediction 619 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2875 Dere-ChrDere05 39331342 39345566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2875 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 3.23e-11 60.1