Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2866 ATGCGCACCGCTTTTCCTTCTCCACGCGCCCTTGGCTCCCTCGTAAACTCACGCTGCAAACGTCAACTGGCTCTGGCGTTTGATCAAACTAATCAACAAAATGATCCTGGTGCAATTCTACGAGATGGAAAGGAAATCCTTTTTCAGGCATTCAACTGGGAGTCTCACAAGAATGATTGGTGGAGAAATTTAGAAAGAAAAGTTCCTGACATAGCAAAGGCTGGATTTACTTCAGCATGGCTGCCACCACCAACTCATTCCTTCTCACATGAAGGTTATACTCCACAGAACCTTTACTCTCTCAATAGTTCCTATGGTTCTGAGCATCAGTTAAAAGCTTTGCTTCATAAGATGAAGCAATACAAGGTCAGAGCAATGGCTGACATAGTTATCAATCATCGTGTTGGCACAACCCAAGGACATGGAGGGATGTATAATCGGTATGATGGAATTCCATTGTCATGGGATGAACGTGCTGTGACATCATGTACTGGTGGGCTGGGTAATCATAGCACGGGGGCCAATTTCCATGGGTTTCCAAATATTGATCATACCCAAGATTTTGTGAGAAAGGACATCATTGGATGGCTCCGATGGCTACATAATACTGTAGGCTTTCAGGATTTTCGTTTTGATTTTGCAAGGGGTTATTCACCAAAGTTTGTGAGAGAATATATTGAAGGAGCAAAGCCAGCATTCTCTGTTGGGGAGTACTGGGATTCTTGCAACTATCACGGTTGTGTCCTGGACTATAACCAAGATAGCCATAGGCAACGGATAATCAATTGGATTGATGGCACAGGTCAGCTTTCAACCGCATTCGACTTCACAACAAAAGGAATTCTCCAGGAAGCTGTCAAGGGAGATTTTTGGCGTTTGCGGGATCCTCAAGGAAAGCCACCAGGCGTGATGGGATGGTGGCCTTCAAGGGCAGTAACATTTCTAGATAACCATGATACAGGCTCAACACAGGCTCATTGGCCTTTTCCCTCAAATAATATCGTGGAGGGGTATGCTTATATATTGACTCATCCAGGAATACCAACAGTTTTCTATGATCACTTTTACGATTGGGGTAACTCCATTCGCGATCAGATTGTGAAGTTGATTGAGATCCGCAAGCGTCAAGGTATTCACAGTAGATCATCTGTCAGGATTGTGGATGCCAAGCAAAATCTTTACTCAGCAATCATCGGGGAGAAATTGTGCATGAAGATTGGAGATGCTTCTTGGTGCCCTTCTGGGAGGGAATGGACGCTGGCAACTTGTGGCCACAGATATGCAGTATGGCACAAATAG 1299 0.4457 MRTAFPSPRALGSLVNSRCKRQLALAFDQTNQQNDPGAILRDGKEILFQAFNWESHKNDWWRNLERKVPDIAKAGFTSAWLPPPTHSFSHEGYTPQNLYSLNSSYGSEHQLKALLHKMKQYKVRAMADIVINHRVGTTQGHGGMYNRYDGIPLSWDERAVTSCTGGLGNHSTGANFHGFPNIDHTQDFVRKDIIGWLRWLHNTVGFQDFRFDFARGYSPKFVREYIEGAKPAFSVGEYWDSCNYHGCVLDYNQDSHRQRIINWIDGTGQLSTAFDFTTKGILQEAVKGDFWRLRDPQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNNIVEGYAYILTHPGIPTVFYDHFYDWGNSIRDQIVKLIEIRKRQGIHSRSSVRIVDAKQNLYSAIIGEKLCMKIGDASWCPSGREWTLATCGHRYAVWHK 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2866 432 Pfam Alpha amylase, catalytic domain 67 322 IPR006047 GO:0005975
Dere05g2866 432 Pfam Alpha-amylase C-terminal beta-sheet domain 375 431 IPR012850 GO:0004556|GO:0005509|GO:0005975
Dere05g2866 432 PIRSF Alpha-amylase_plant 24 432 IPR013775 GO:0004556|GO:0005509|GO:0005975
Dere05g2866 432 SUPERFAMILY Glycosyl hydrolase domain 378 432 - -
Dere05g2866 432 SUPERFAMILY (Trans)glycosidases 53 362 IPR017853 -
Dere05g2866 432 Gene3D - 378 432 IPR013780 -
Dere05g2866 432 SMART alpha-amyl_c2 374 432 IPR012850 GO:0004556|GO:0005509|GO:0005975
Dere05g2866 432 Gene3D Glycosidases 45 377 - -
Dere05g2866 432 PRINTS Alpha-amylase signature 206 217 IPR006046 GO:0004556|GO:0005975|GO:0043169
Dere05g2866 432 PRINTS Alpha-amylase signature 309 321 IPR006046 GO:0004556|GO:0005975|GO:0043169
Dere05g2866 432 PRINTS Alpha-amylase signature 122 133 IPR006046 GO:0004556|GO:0005975|GO:0043169
Dere05g2866 432 CDD AmyAc_arch_bac_plant_AmyA 46 384 - -
Dere05g2866 432 SMART aamy 45 373 IPR006047 GO:0005975
Dere05g2866 432 PANTHER ALPHA-AMYLASE 35 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2866 Dere-ChrDere05 39243162 39247579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2866 26 432 Glycoside Hydrolase AT1G76130 79.853 0.0 700
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2866 05 39243162 39247579 Dere05g2866 05 39243162 39247579 ECH