Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2861 ATGAATCAGTTGGTGGGGCAAACAGATAGAGAGTATCAGCAAGTGGGCCTGGTGACTATTGAGGTGCGCCGTTTGCTTGAGTTCGGCCTTATGCAAGCCTACAGCAGTATTTTGCACTGGAAGGCTAAACCCCTAACCCACCAAAAGGAGACATTTGCCAGGTCAGCAATGTCAGACCACCCAGTCCAGCCTTTGCCTCGCCGCCGGTCGCAGAATATGTCGCCGGAGGAGACAAACAAGGGATGGAGTGGGGAGGAGGGGAAGCATTATCCTCCCCCACTCGCCTCTCACGAGGACGTGGTCAAGGACCCCACTGTATTCTGGGACACTCTCAGGCGCTTTCACTTTGTTCTGGGTACCAAGTTTATGATACCTGTGATTGGAGGGAAGGAACTGGATTTGCACGTTCTTTACGTGGAGGTTACCAGGAGGAGTGGTTATGAGAAGGTGGTGGCAGAGAAGAAATGGAGGGAAGTGGGGAATGTATTCAGGTTCTCTCCCACCACGACGAGTGCTTCTTTTGTACTGAGGAAACACTACTTTAGTCTTCTTTACCATTACGAACAAGTTCACTTCTTTAAGGTTCGGGGTCCTCTGTACACTCCATCTGCTGCTGCATTTTCTGTCAGTAACCAGTCGTGGAAACCTGAATTAGCTATTGTGGAATATTCACCCAAGCGGATAAATGAGTGTCCTGATTCACACAATGAAGAAAATTCGTGTTTTAAAGTGAACGGGATGATAGAGGGGAAATTCGATTGTGGGTATTTGGTGTCAGTGAAAGTGGGTTCGGAGGTTCTGAGAGGGGTGCTTTACCATCCACAGCAATCCGATGCTGGTGCATCAGTTTCACAATGCAATAGTGAGAATGCCATTGTTCCATACAATGGAAAAGGTCGAAGGTTGGGTAGAAGGAGGCGAAACAGAAGAAGGTGGGACCCTAACTACCCCAAGCCAAACAGGAGTGGCTATAACTTCTTTTTTGCTGAGAAGCATTACAAGCTCAAAGCCCTTTATCCAAACAGAGAGAGGGAGTTTACCAAAATGATTGGCCAGTCATGGAGCAGTCTCAGCCCCGAAGAGAGAATGGTTTACCAGAACATTGGCTTGAGAGACAAGGAAAGGTACAAGAGAGAACTGAGGGAGTACAAAGAGAAATTGAAGCTCAGTCAGACAGTGGAACTCGGAACTCTTTAA 1197 0.4787 MNQLVGQTDREYQQVGLVTIEVRRLLEFGLMQAYSSILHWKAKPLTHQKETFARSAMSDHPVQPLPRRRSQNMSPEETNKGWSGEEGKHYPPPLASHEDVVKDPTVFWDTLRRFHFVLGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGNVFRFSPTTTSASFVLRKHYFSLLYHYEQVHFFKVRGPLYTPSAAAFSVSNQSWKPELAIVEYSPKRINECPDSHNEENSCFKVNGMIEGKFDCGYLVSVKVGSEVLRGVLYHPQQSDAGASVSQCNSENAIVPYNGKGRRLGRRRRNRRRWDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGQSWSSLSPEERMVYQNIGLRDKERYKRELREYKEKLKLSQTVELGTL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2861 398 SUPERFAMILY ARID-like 96 196 IPR036431 GO:0003677
Dere05g2861 398 SMART ARID_2 98 188 - -
Dere05g2861 398 MobiDBLite consensus disorder prediction 65 79 - -
Dere05g2861 398 Pfam ARID/BRIGHT DNA binding domain 107 188 IPR001606 GO:0003677
Dere05g2861 398 MobiDBLite consensus disorder prediction 52 95 - -
Dere05g2861 398 CDD ARID_HMGB9-like 103 188 IPR045303 GO:0003677
Dere05g2861 398 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 317 384 IPR009071 -
Dere05g2861 398 SUPERFAMILY HMG-box 314 387 IPR036910 -
Dere05g2861 398 ProSiteProfiles ARID domain profile. 101 192 IPR001606 GO:0003677
Dere05g2861 398 SMART bright_3 102 193 IPR001606 GO:0003677
Dere05g2861 398 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 72 393 - -
Dere05g2861 398 SMART hmgende2 316 385 IPR009071 -
Dere05g2861 398 Pfam HMG (high mobility group) box 317 384 IPR009071 -
Dere05g2861 398 Coils Coil 373 393 - -
Dere05g2861 398 Gene3D - 94 196 IPR036431 GO:0003677
Dere05g2861 398 Gene3D High mobility group box domain 302 394 IPR036910 -
Dere05g2861 398 CDD HMG-box_AtHMGB9-like 317 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2861 Dere-ChrDere05 39214582 39217817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2861 88 389 ARID Transcription Factor Family AT1G76110 67.208 8.93e-137 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dere05g2861 ARID 4.9e-17 CL0123