Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2850 ATGGGGTTCTGCTTCAGCAAATCCTCCTCTGGTTCACCAACCCATCATTACCATCAACTTCCTCAGAGAAACCAACACCAAGCGCAACCTCGAACTCCACACCTCCCCCACCGAGCTCCAGACTCGGTCCCTTCTACCTACAGCGCTTCCTCCCCTTCTTCTCAATCTCTAGTTGGACCAGTTTTAGGCAAACCGCATATTGACATTAAAACACTTTATACTATTGAGCAAGAATTGGGAAGAGGCCAATTTGGGATTACCTATCATTGCACGGAGAAGGCCACCGGACTCAAGTACGCTTGTAAGTCCATATCTAGAAGAAAGCTAACTAGCAGGAAGGGAATTGAGGATGTTAAGAAGGAAATTATGATTCTACAGCACCTTACGGGTCAGCCCAATATAGTGGAATTTAAGGGCGCTTATGAGGATAGGCTTAATGTGCATTTGGTAATGGAGTTGTGTGCCGGGGGCGAGCTTTTTGATCGGATTATTGCAAAGGGGACTTACTTGGAGCACGAAGCTGCCATCATATTCAGGCAAATTGTGAATGTGGTTCATGTTTGTCATTTCATGGGGGTGATGCATAGGGACTTGAAGCCAGAGAATTTCTTACTGGCTACTAGGGATTCCGATTCACCCTTGAAAGCCATGGATTTTGGGCTCTCTGTCTTCATTGAGGAAGGTAAAAAGTATAAGGAAATTGTGGGAAGTGCATACTATGTGGCCCCAGAGGTACTAAAACGGAATTATGGAAAGGAGATAGATGTGTGGAGTGCAGGAGTCATTCTATACATCCTCCTGAGTGGGGTGCCTCCGTTCTGGGCTGAGAACGAGAAAGGCATATTTGATACTATTTTGGAAGGCAAATTAGATCTTCAAAGCCAACCATGGCCTTCTATTTCAGATTCTGCAAAGGATCTGATCAGGAAAATGTTGACATTTGATCCTAAGAAGCGCATTACAGCTGCTGATGCCCTTGAACACCCATGGATGAAGGAAGGTGGTCAAGCGACTGACAAACCTATAGACAGTGCTGTTTTAATTCGGATGAAACAGTTCAGAGCAATGAACAAAATGAAGAAACTTGCTCTAAAGGTAATAGCACAAAACCTTTCAGAGGAAGAGATCAAGGGCTTGAAACAAATGTTCAACAATATGGATACTGATAACAGTGGCACAATCACCCTTGAAGAACTCAAAGTTGGACTAACCAAATTGGGATCTAAACTTAATGAATCTGAAATACAGCAGCTGATGGATGCTGCTGATGTTGACAAGAATGGGACTATTGATTATTATGAATTCATAACTGCCACTATGCATCGGCATAGACTTGAGAAGGAAGAGAATCTGTACAAGGCTTTCCAATACTTCGACAAGGATAACAGCGGATTTATTACAAGAGAGGAGCTTAGACAAGCTTTGACTGAATATGGAATGGGAGATGAAGCTACAATAGATGAAGTCATTGACGATGTTGACACTGATAAAGATGGCAGAATCAATTACGAGGAGTTTGTGGCTATGATGAAAAACGCAGGATAA 1545 0.4298 MGFCFSKSSSGSPTHHYHQLPQRNQHQAQPRTPHLPHRAPDSVPSTYSASSPSSQSLVGPVLGKPHIDIKTLYTIEQELGRGQFGITYHCTEKATGLKYACKSISRRKLTSRKGIEDVKKEIMILQHLTGQPNIVEFKGAYEDRLNVHLVMELCAGGELFDRIIAKGTYLEHEAAIIFRQIVNVVHVCHFMGVMHRDLKPENFLLATRDSDSPLKAMDFGLSVFIEEGKKYKEIVGSAYYVAPEVLKRNYGKEIDVWSAGVILYILLSGVPPFWAENEKGIFDTILEGKLDLQSQPWPSISDSAKDLIRKMLTFDPKKRITAADALEHPWMKEGGQATDKPIDSAVLIRMKQFRAMNKMKKLALKVIAQNLSEEEIKGLKQMFNNMDTDNSGTITLEELKVGLTKLGSKLNESEIQQLMDAADVDKNGTIDYYEFITATMHRHRLEKEENLYKAFQYFDKDNSGFITREELRQALTEYGMGDEATIDEVIDDVDTDKDGRINYEEFVAMMKNAG 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2850 514 Gene3D - 339 513 - -
Dere05g2850 514 ProSiteProfiles EF-hand calcium-binding domain profile. 446 481 IPR002048 GO:0005509
Dere05g2850 514 ProSiteProfiles EF-hand calcium-binding domain profile. 410 445 IPR002048 GO:0005509
Dere05g2850 514 ProSiteProfiles EF-hand calcium-binding domain profile. 482 514 IPR002048 GO:0005509
Dere05g2850 514 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Dere05g2850 514 Gene3D Transferase(Phosphotransferase) domain 1 159 338 - -
Dere05g2850 514 FunFam Calcium-dependent protein kinase 1 339 514 - -
Dere05g2850 514 SUPERFAMILY EF-hand 370 510 IPR011992 -
Dere05g2850 514 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Dere05g2850 514 Gene3D Phosphorylase Kinase; domain 1 74 158 - -
Dere05g2850 514 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Dere05g2850 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Dere05g2850 514 MobiDBLite consensus disorder prediction 1 31 - -
Dere05g2850 514 SMART serkin_6 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2850 514 ProSitePatterns EF-hand calcium-binding domain. 423 435 IPR018247 -
Dere05g2850 514 CDD STKc_CAMK 73 330 - -
Dere05g2850 514 MobiDBLite consensus disorder prediction 43 58 - -
Dere05g2850 514 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Dere05g2850 514 FunFam calcium-dependent protein kinase 1 159 338 - -
Dere05g2850 514 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Dere05g2850 514 PANTHER SERINE/THREONINE-PROTEIN KINASE 66 506 - -
Dere05g2850 514 SUPERFAMILY Protein kinase-like (PK-like) 73 341 IPR011009 -
Dere05g2850 514 FunFam Calcium-dependent protein kinase 1 75 158 - -
Dere05g2850 514 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2850 514 ProSiteProfiles Protein kinase domain profile. 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2850 514 Pfam EF-hand domain pair 379 439 IPR002048 GO:0005509
Dere05g2850 514 Pfam EF-hand domain pair 448 511 IPR002048 GO:0005509
Dere05g2850 514 SMART efh_1 378 406 IPR002048 GO:0005509
Dere05g2850 514 SMART efh_1 485 513 IPR002048 GO:0005509
Dere05g2850 514 SMART efh_1 450 478 IPR002048 GO:0005509
Dere05g2850 514 SMART efh_1 414 442 IPR002048 GO:0005509
Dere05g2850 514 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2850 Dere-ChrDere05 39102185 39105972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2850 1 513 EF-hand Containing Proteins AT3G20410 65.121 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere05g2850 Pkinase 7e-73 CL0016