Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2849 ATGATTAGAAGAATTCAAGGGGGGAAAAAGGGCGAGCAGAAGACGAAACATGTAAGCCACCGACCTAGTTACTCATTACTGAAAATTCCAAGCGTTCTTGGCATTCCAGGCCGAGCTGATGATTTTGAATCAGATACATCTCTTTCTGCTCGACTCATACGAATACCCATGGAGGAGTCATGGAATTCGGTTCTCCTCAGAAGCGTAAAGCCATATGGGGATTCTCGCGACAGATCAAAGGGAAGAAGAAAAGCACAAAAGAGAAGAAAGCAAATTGAAACAAAGCTGAAAAACCAGAAAACAAAGGGAGGCATCAGCCAAGTAGTGGTCTTGATGGGACTGGGTTTCTTTAAGGCGTTTTGCTGTAACAAGTCTCATGATATTCCCATCGCCTCCTCGGATTCCTCTCCTCACCGCCCCTCAAAACAGAGGTCCAGGAAGTCCCAACACGACTTCAAACTACCACCACCACCACCTCCTCCTCCTCGTCCCGCTTCTGAGCCTGCACAGTCTTCCCAGATAGGACCAATTCTGGGGAAACCGTACGTCAACATAACTGCGATATACGAGCTTGAAAAAGAACTGGGAAGAGGACAATCGGGGATCACTTATCTGTGCAAAGAGAAAGCAACAGGGAGAATCTATGCATGCAAATCCATAGCGAGGAGAAAGCTGTTGACAAGGGTGGAGATAGAGGACGTTCGAAGAGAGATTCTGATACTGCAGCATCTGTCGGGGCAACCCAATATAGTGGAATTCAGGGGGGCGTATGAGGACAGGCAGAACGTGCACCTGGTGATGGAGCTGTGCTCGGGGGGTGAGCTCTTTGACCGTATAATTGCCAAAGGCAACTATACGGAGCGCGAAGCTGCTGCAATATCCAGGCAGATTGTGACGGTGGTTCATGTCTGCCATTTTATGGGCGTAATGCATCGGGACCTCAAGCCCGAGAATTTCTTGTTGGCCAGCAAGGACGATGATGCCCCCATCAAAGCCACCGATTTCGGACTCTCCGTCTTCATTGAGCCAGGTTACTTTCTTCTCTGCTTTTGCATGCCCATCCCTGCTCCTTTTGACTCTAAGGGAGGACCTGTAGTTCTCTACATATGCATGAGCCCAAGCCCACTATGCTTTTTTTGGGCCACTACCCCACATAGCACATTTTGTGTTGGGCTTTAA 1179 0.4869 MIRRIQGGKKGEQKTKHVSHRPSYSLLKIPSVLGIPGRADDFESDTSLSARLIRIPMEESWNSVLLRSVKPYGDSRDRSKGRRKAQKRRKQIETKLKNQKTKGGISQVVVLMGLGFFKAFCCNKSHDIPIASSDSSPHRPSKQRSRKSQHDFKLPPPPPPPPRPASEPAQSSQIGPILGKPYVNITAIYELEKELGRGQSGITYLCKEKATGRIYACKSIARRKLLTRVEIEDVRREILILQHLSGQPNIVEFRGAYEDRQNVHLVMELCSGGELFDRIIAKGNYTEREAAAISRQIVTVVHVCHFMGVMHRDLKPENFLLASKDDDAPIKATDFGLSVFIEPGYFLLCFCMPIPAPFDSKGGPVVLYICMSPSPLCFFWATTPHSTFCVGL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2849 392 MobiDBLite consensus disorder prediction 81 95 - -
Dere05g2849 392 Pfam Protein kinase domain 189 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2849 392 Gene3D Phosphorylase Kinase; domain 1 191 274 - -
Dere05g2849 392 Gene3D Transferase(Phosphotransferase) domain 1 275 369 - -
Dere05g2849 392 MobiDBLite consensus disorder prediction 1 21 - -
Dere05g2849 392 SMART serkin_6 189 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2849 392 MobiDBLite consensus disorder prediction 71 99 - -
Dere05g2849 392 FunFam Calcium-dependent protein kinase 1 191 274 - -
Dere05g2849 392 MobiDBLite consensus disorder prediction 152 167 - -
Dere05g2849 392 MobiDBLite consensus disorder prediction 1 19 - -
Dere05g2849 392 MobiDBLite consensus disorder prediction 129 177 - -
Dere05g2849 392 Coils Coil 82 102 - -
Dere05g2849 392 ProSiteProfiles Protein kinase domain profile. 189 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2849 392 PANTHER SERINE/THREONINE-PROTEIN KINASE 144 343 - -
Dere05g2849 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Dere05g2849 392 SUPERFAMILY Protein kinase-like (PK-like) 189 351 IPR011009 -
Dere05g2849 392 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2849 Dere-ChrDere05 39099214 39101361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2849 121 388 EF-hand Containing Proteins AT1G50700 51.773 5.73e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere05g2849 Pkinase 5.4e-41 CL0016