Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2846 ATGCTCGATTCCGTTCTTTTGGCCCTCTTCCTACCATGCCTTGGCATGGCGTCTATATTTATTGTCTACATCTGCCTTCTCCGGTACGCTATTACTCGCCAGCCCGCTATCAGCCTACCGGTGAAGCCAGTCTCCAACAAGGGTCTCTCAGCTTCGCAGCTTGAGAAATTGCCAAAAGTCACCGGAAAAGAGCTGGTCATTGGGACTGAATGCGCCGTGTGCCTCGACGGCATCGAGAACGAGCAACCTGCTCGACTGATTCCCGGTTGCAATCACGGATTTCATTTGGAATGCGCCGATACTTGGCTTTCCAAGAATCCGCTTTGTCCGATTTGTAGAGCCAAACTTGATCCTCAGTTTTTCAATTCTTCGGAAAACCAGTGTTGA 387 0.5013 MLDSVLLALFLPCLGMASIFIVYICLLRYAITRQPAISLPVKPVSNKGLSASQLEKLPKVTGKELVIGTECAVCLDGIENEQPARLIPGCNHGFHLECADTWLSKNPLCPICRAKLDPQFFNSSENQC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2846 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 119 IPR013083 -
Dere05g2846 128 Pfam Ring finger domain 70 113 IPR001841 -
Dere05g2846 128 SUPERFAMILY RING/U-box 58 119 - -
Dere05g2846 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Dere05g2846 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 123 - -
Dere05g2846 128 SMART ring_2 71 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2846 Dere-ChrDere05 39062069 39062455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2846 1 127 C3H Transcription Factor Family AT5G42200 51.880 1.24e-44 141
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2846 05 39062069 39062455 Dere04g0052 04 627251 628774 CCT
Dere05g2846 05 39062069 39062455 Dere05g2846 05 39062069 39062455 ECH