Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2841 ATGAAACCAAGAAGACTAGCAAATGGGGTTGTGGATTTGGATGCGTGGGATGGCCATGTGGTTGTGAAGGGAAATACAAAAGAAGAGAACTTTCATTTTCCTATCCTTCATCTTCATTTTGGCTTCGAGCATTCTGCTACGAAAGAAAATGGCCAAAACCATATTTGTTTTCGCCAGTCTCCTCGGCTTATACTAGTTCACAGTCACTACCTGCGCCTTCTCACGCCACCTTTTATGGGGGTAGCGATGCCTCAGGAACCATGGGTAAGCTGTGAAGTTATGTTTGTAGGAAGAGGAGCTTGTGGATATGGGAATCTGTACGCAACAGGATATGGGACTAGCACTGCTGCTTTAAGCACTGCCTTGTTCAACGATGGAGCTTCGTGCGGGCAATGCTGCAGAATCATATGTGATTACGAAGCAGACTCAAGATGGGTTCCATGCTTAAAGGATGGAGGGGTTAGGTTCAGCATCAATGGGAGAGACTACTTTGAGTTAGTGTTGATAAGCAACGTGGGAGGAGCTGGATCTATCAAATGTGTCCATAAAAGGTCTAAAACTGGGTGGATGCCAATGTCAAGAAACTGGGGAGCCAATTGGCAATCCAATGCGTATTTGAGTGATCAATCTTTGTCGTTCAGCGTCACAACCACTGATGGAGAGACCAGACTTTTCCACGATGTGATTCCAGCAAATTGGGCGTTTGGCCAGACATTTACTAGCTCACTGCAATTCTACTAA 741 0.4548 MKPRRLANGVVDLDAWDGHVVVKGNTKEENFHFPILHLHFGFEHSATKENGQNHICFRQSPRLILVHSHYLRLLTPPFMGVAMPQEPWVSCEVMFVGRGACGYGNLYATGYGTSTAALSTALFNDGASCGQCCRIICDYEADSRWVPCLKDGGVRFSINGRDYFELVLISNVGGAGSIKCVHKRSKTGWMPMSRNWGANWQSNAYLSDQSLSFSVTTTDGETRLFHDVIPANWAFGQTFTSSLQFY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2841 246 Gene3D - 158 246 IPR036749 -
Dere05g2841 246 Gene3D - 85 157 IPR036908 -
Dere05g2841 246 PRINTS Expansin/Lol pI family signature 97 115 IPR007118 GO:0005576
Dere05g2841 246 PRINTS Expansin/Lol pI family signature 119 137 IPR007118 GO:0005576
Dere05g2841 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 241 IPR007117 -
Dere05g2841 246 FunFam Expansin 153 245 - -
Dere05g2841 246 Pfam Expansin C-terminal domain 154 230 IPR007117 -
Dere05g2841 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 98 166 IPR007112 -
Dere05g2841 246 PANTHER EXPANSIN-A15 98 140 IPR002963 GO:0009664
Dere05g2841 246 SUPERFAMILY Barwin-like endoglucanases 97 171 IPR036908 -
Dere05g2841 246 SUPERFAMILY PHL pollen allergen 150 241 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2841 Dere-ChrDere05 39021417 39022883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2841 88 240 Expansin Gene Family AT2G03090 42.466 3.91e-47 155