Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2838 ATGTCGAAGAAGCAACGAAGAAACAACAGAGTGGAAGGGCGTGAACTTGCTGAAGCCGCTTTACCAACGAAGCGAGGGTGGAGAAAAGTGAGTGGGTGTGTGCATCTGAAACTCTGTGCTATGGCTAAGACCACGCCCAATCACACACAGACTGTTTCTGGATGGGCAGCTCATGATTCTTCTGGCAAAATCACCCCCTACACCTTCAAACGAAGGGAGAACGGCGTTAACGATGTCACCATAAAGATCCTGTATTGTGGGATTTGCCACACCGACCTTCACCACGCTAGAAACGACTGGGGCATCACTATGTATCCTGTAGTTCCGGGGCACGAGATCATAGGGGTGATAACGAAGGTGGGAAGCAACGTGAAGGGTTTCAAGGAAGGAGACAGAGCAGGGGTGGGTTGCCTGGCAGCCACGTGCTTGGAGTGTGAATACTGCAAAAGTGATCAGGAGAACTACTGCCCACAATTACAGTTTACATACAACGGCATTTTCTGGGATGGCAGCATCACCTACGGTGGCTACTCCGACATGTTAGTCGCCGATTACAGATATGTGGTACACATACCGGAAAACCTGGCAATGGATGCGGCGGCGCCGCTACTATGTGCGGGAATAACAGTGTTCAGTCCCATGAAAGACCACGATTTGGTAGACAAAGGAGGGAAAAGGATAGGGGTGGTTGGTCTGGGAGGGCTGGGACACGTGGCGGTGAAATTTGCCAAGGCATTCGGGCACCACGTGACTGTGATCAGCACATCCCCTTCCAAGGAAGCCGAAGCCAAGCAACGACTGGGAGCTGATGAGTTCATAGTGAGCACAAACCCCAAACAAATGCAGAGTGGGAAGAGGACGCTTGATTTCATATTGGACACTGTTTCAGGGGAACACTCTCTGCTGCCCATCTTGGAATTGCTCAAAGTCAACGGCACTTTGTTCATCGTTGGTGCTCCCGAAAAGCCATTTCAATTGCCTGCTTTCCCTTTGATCTTCGGGAAAAGGGCAGTAAAAGGTGGGATCATAGGAGGAATGAAGGAGACGCAGGAAATGCTGGAGATTTGTGGGAAGCACAATATCACGTGTGACATTGAGTTGATCACGCCAGATAGAATCAACGAGGCTTTGGACCGTCTGGCCAAGAACGATGTTCGCTACCGTTTTGTCATTGACATAACTGCAACAACCTCTTCAACATAG 1203 0.5012 MSKKQRRNNRVEGRELAEAALPTKRGWRKVSGCVHLKLCAMAKTTPNHTQTVSGWAAHDSSGKITPYTFKRRENGVNDVTIKILYCGICHTDLHHARNDWGITMYPVVPGHEIIGVITKVGSNVKGFKEGDRAGVGCLAATCLECEYCKSDQENYCPQLQFTYNGIFWDGSITYGGYSDMLVADYRYVVHIPENLAMDAAAPLLCAGITVFSPMKDHDLVDKGGKRIGVVGLGGLGHVAVKFAKAFGHHVTVISTSPSKEAEAKQRLGADEFIVSTNPKQMQSGKRTLDFILDTVSGEHSLLPILELLKVNGTLFIVGAPEKPFQLPAFPLIFGKRAVKGGIIGGMKETQEMLEICGKHNITCDIELITPDRINEALDRLAKNDVRYRFVIDITATTSST 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2838 400 SMART PKS_ER_names_mod 59 391 IPR020843 GO:0016491
Dere05g2838 400 Gene3D - 55 393 - -
Dere05g2838 400 CDD CAD1 54 392 IPR047109 GO:0016616
Dere05g2838 400 Pfam Alcohol dehydrogenase GroES-like domain 77 190 IPR013154 -
Dere05g2838 400 FunFam Cinnamyl alcohol dehydrogenase 206 363 - -
Dere05g2838 400 SUPERFAMILY GroES-like 57 223 IPR011032 -
Dere05g2838 400 FunFam probable cinnamyl alcohol dehydrogenase 55 219 - -
Dere05g2838 400 Gene3D - 206 363 - -
Dere05g2838 400 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 197 361 IPR036291 -
Dere05g2838 400 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 110 124 IPR002328 GO:0008270|GO:0016491
Dere05g2838 400 PANTHER ALDEHYDE REDUCTASE 47 394 IPR047109 GO:0016616
Dere05g2838 400 Pfam Zinc-binding dehydrogenase 234 355 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2838 Dere-ChrDere05 38995215 38997498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2838 54 396 Monolignol Biosynthesis Gene Families AT2G21730 59.884 1.05e-148 424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2838 05 38995215 38997498 Dere05g2838 05 38995215 38997498 ECH