Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2837 ATGGTTACTGCAAATGATTCTTCCTTTAATCATCATTCGCCGACTAGTACTGAGAACACCAAGTTCCAGCAAAAAAACCTGCCATCTCCATGGGCTCAAGTTGTCCGTGGTGAGCTCGAATCAAATTCTGACATTCATCTGCTTCCATCATCTTCCTCTTCGTCGTCACTCATTATCCCTTTACCCGATCAGCCACCAGTCTCTGATGTCTCTCCGAAAGTGACATCTACATCGCCAGTGTCAAATAATTTTAATGTTAGTGTTACAGATAGCTCAGACGCATACGAGGACAATACGAATCGTCTTAAAAAGCCCGCTTGGAACAAGCCCTCTAACGATGTTGAGGTTGGTTCTGTAATGGGTGCTTTCTCTTGGCCTGCTTTATCGGAATCCACAACTAAAACATCGACTAAATTGTCAGCTGACTCGTCCTCTAAGACTCTCATGGATGGATCACCTTCCTCTTTTCAGGGGTCTGGCAGTTCACACTCCCCTCAAAAACAAGCTACTAGTAATGCAAAGCCTAATTCTGCAACAAACTATTCTGTGCATCATAGACAAAGATCAATGAAGCGTGGAGGTAGCAACAGCATTGGGGCTGGTCATCCACAGAGCAGCTTCTCCAACCCATCCCCACCTCCACCTCCCCCACCCTTTCCTGTATTTCAGATCCCGCCAGGTAGCTATAGTAACGTGGTACCAGGCGTTCCAGATCCTTCTCCAAGAGAAATCCCTTACAGGAACAATAACTGGGATACAAGACCACCAGTCGGAGGTTTTGTGCCTGCATTGAATGATCATTGGAATTCATCCCGTCGAGGCAATTTTGGGCCCCATCAACGTGGAGATGGACCCTATCATAATAACCATGGGGGCAGGCGTGACCAGGATCGTGGAAATTATGCAAATTCTAGAGATGCTCATGTACACCAACCGAGGATGTCCCCTAGGGGATTAGTGAGGCACCCGCCTCCTAGTACAGCTGCAATTGTTCCCCCTCCGCCCGTGGGACCCTTTGCAAACCCTGTGGGTTTTCCAGAATACTATTATTTTCCAACGTTACCACTGGAACCGTTCAGGGGTATGCCATTCTTTACTCACGGCCCTCCTCCTGCTATGTTCTACCCTGTGGCAGAACCTCCTCTGACCAATATGATTGTGAACCAAATTGATTATTACTTTAGTGATGCTAATCTAGTGAAAGATGAGTTTTTAAGATCCAACATGGATGAACAGGGTTGGGTTCCCGTTGCTTTGATAGCAGGCTTCCGTCGGGTTAAAAGTTTGACAAACAACATTCAGCTGATACTGGATTCATTGAAAAGTTCCACTGTTGTGGAAGTACAGGGTGACAAGGTGCGGAGGCGTAGTGAATGGTCTATATGGCTGCCCTCTGCAAGACTTCAGGATGATTCTGGTTCATTATCTCCTGGTGGATCAAGTGACAATAACTTAGCAGCTGATTTTCAAAATATTGCTCTGGGAGAAGCTGTTACAGACAAAGGTAATTCAGAACCCACTTCAGAGGCCCATGCAGGAAGATCTCCGACAGATTTTTCCAGTCAATCTGAACTCCCAAACGGTGATACTGCAGGGAACACCAATTAA 1608 0.4633 MVTANDSSFNHHSPTSTENTKFQQKNLPSPWAQVVRGELESNSDIHLLPSSSSSSSLIIPLPDQPPVSDVSPKVTSTSPVSNNFNVSVTDSSDAYEDNTNRLKKPAWNKPSNDVEVGSVMGAFSWPALSESTTKTSTKLSADSSSKTLMDGSPSSFQGSGSSHSPQKQATSNAKPNSATNYSVHHRQRSMKRGGSNSIGAGHPQSSFSNPSPPPPPPPFPVFQIPPGSYSNVVPGVPDPSPREIPYRNNNWDTRPPVGGFVPALNDHWNSSRRGNFGPHQRGDGPYHNNHGGRRDQDRGNYANSRDAHVHQPRMSPRGLVRHPPPSTAAIVPPPPVGPFANPVGFPEYYYFPTLPLEPFRGMPFFTHGPPPAMFYPVAEPPLTNMIVNQIDYYFSDANLVKDEFLRSNMDEQGWVPVALIAGFRRVKSLTNNIQLILDSLKSSTVVEVQGDKVRRRSEWSIWLPSARLQDDSGSLSPGGSSDNNLAADFQNIALGEAVTDKGNSEPTSEAHAGRSPTDFSSQSELPNGDTAGNTN 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2837 535 ProSiteProfiles La-type HTH domain profile. 376 465 IPR006630 -
Dere05g2837 535 MobiDBLite consensus disorder prediction 69 95 - -
Dere05g2837 535 FunFam la-related protein 1B isoform X2 372 462 - -
Dere05g2837 535 MobiDBLite consensus disorder prediction 501 535 - -
Dere05g2837 535 PANTHER LUPUS LA PROTEIN-RELATED 124 464 IPR045180 -
Dere05g2837 535 MobiDBLite consensus disorder prediction 207 224 - -
Dere05g2837 535 Pfam La domain 386 441 IPR006630 -
Dere05g2837 535 SMART la 380 456 IPR006630 -
Dere05g2837 535 MobiDBLite consensus disorder prediction 1 29 - -
Dere05g2837 535 MobiDBLite consensus disorder prediction 130 184 - -
Dere05g2837 535 MobiDBLite consensus disorder prediction 44 113 - -
Dere05g2837 535 MobiDBLite consensus disorder prediction 496 535 - -
Dere05g2837 535 SUPERFAMILY "Winged helix" DNA-binding domain 373 464 IPR036390 -
Dere05g2837 535 Gene3D - 376 466 IPR036388 -
Dere05g2837 535 MobiDBLite consensus disorder prediction 192 206 - -
Dere05g2837 535 CDD LAM 384 455 - -
Dere05g2837 535 MobiDBLite consensus disorder prediction 44 61 - -
Dere05g2837 535 MobiDBLite consensus disorder prediction 286 304 - -
Dere05g2837 535 MobiDBLite consensus disorder prediction 130 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2837 Dere-ChrDere05 38989373 38993787 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2837 05 38989373 38993787 Dere05g2837 05 38989373 38993787 ECH