Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2819 ATGACTCTTGAAGATTTCTTTACCTTGACCGAGATGAAAGATGGGCTCACAGCCCCTTCTCGAGTACAGGAGCTAGTCTCTGTAATGCAGAAGGAGAAAGATAGCGTGATTAAGAATGCTGGTGATGCGACAAGGCAATGGGCTGCTGTTGCAAGCACTATTGCTGCCACAGAGAATAAAGATTGTCTTGATCTCTTTATTCAATTAGATGGACTCTGGTTCATTAATAGGTGGTTAACGGAGGCCCAAAATTTTGGTCTTGATCCTAATGATGGCTTCATTGAGGAGTCAATTACTGCACTCTTACGAGCAGTTGAAAAGTTGCATCTAGACAGTGAAAAGTTGACATCATCTGGAATTTGGGTGACTGTTAGAAATCTCCTTGGCCACCATAGCTCTAGGGTTCAGGATAGAGCAAGAATATTGTGTGATAGTTGGAAGGTGAGTGGAAGCAGTGATGTGGATTTTCATGAAGTGAAGCCTGTGAAAGTCAATGATGGGAGTGACAAAACTGTTAGGGAGGAAGGTCAGCCATCGTCTGTAGATGAAGCTGGCAATGATAAAGATCATGCATCAGGACTAGTAGAAGGTGAGAAATCTCCATTGAGAAGCTCTGATTCTCTACTACCAGAAGTTGTCAATGTACAGAAACAGACTTCTATCCATTCTCCTGTAAGTTTGGATCATGAAGATGTCAAAGTGAGATCACCGGACCATCCTGCAAATGTTTCAACTTCTGTGCAAGAAGTTGCTTCCATAAAAGAAGGTTTACCTTCGTGCGCTGTAGATGGGACCACTTCAGAGGGGACTGGTAGCTTTCCTGTTCAAAAACAAGGCAATGTTGAAGGGCAATCAGATCTTCTGAAGTTTAATGACTCATCCGAAAAGGAGAAGCAGGAGCAAAGTGGTAATGTTCCTCCAGAAAAAATAGTAGCAGAAGAAAACACTTTGGCATCCTCCAAGCCAGAGCTTGGCCCTGTTTCAATGGATGCTACTGAGGTTGAAGCTCTGGAATCAGTGAAAGAGCCTGCTTTACAACATAACATTGAAGACAATAGGGATGCTGTCTGTCATAAAATAACTGCTTCTGGTAGTGTGAGGATAGCCACACCTGACAGAAAGAGTGGGCCAGCTAATATTGGAGCTATACATTCTAGCAGTCCACAACCTTTGAATACTGAAGAAAAGGATGATGACTGTTCTTCTCATGCTTTGCATGACTCATCAGTCAGTGGAAGTAAATCAGGAAAGCCTGAGGTGATAGAGACATCTTTTTCCAAAACAGACTATGTTAGAGCAGTGAAGGAAGGTAAGGGGTATGTTAGTAATGAAGGTGACGATACCTCAAATGGTTCTGATTCTGTTAAACCAGGAAGAGTTCCAAGAAGCCCTAACATGATTGACAAGAAGAGTTCTGACATTGAACTTGATTATGGCATTGTTGATGCTTTAGAAGTTGCTCGACAAGTTGCTCAGCAAGTTAGAAGAGAAGTTTGCAGCTCTTCTTCAGAGAAAATATCAGAAGGTGGAAATCAGCAACCGGGCAGCCCAGATTCCATAAAAAGAGAGGATGTGCATACTTGTATCCCACCTGAGGAGGTCGCATCCAGGCAAAGCTGCTCTGCTGAGGCTTCTCCTGAGGAGGAGGGACATGCAACTTCAGACATTGTTGAGGCTGAGCCAGAATGCATACCTACCATGGAGTCCTTACAAGTGACAAAAGCAGCTCCAGATCCAGGAGGTAATTCAGATAAAATTCAATGTGCTTTTGATCTCAATGAAGAACTGGGTTCTGATGATATGGATGTTTCTGCAAATGCTATGTCTACGCCAATACCTGTTGTCTCTGCTTCAAAGCCTGCGGCAACTCCTGAGTTGCCTGCAGCACCTTTGCAGTTTGAGGGGACACTTGGATGGAAAGGATCTGCTGCCACCAGTGCCTTTCGTCCTGCATCGCCTCGTAAAAATTCTGATAGTGAGAAAAATTTTTCTGTTGGTGGAAACTCTGAAATTTCAAAGCAAAGGCAGGATTGGCTTGATATTGATCTGAACGTGGCTGAGGATGAAGATGGATTGGGAAAACAAGTCGCTGAATCATCTAGCCTTCCCTCTGGACAATCATCTGTAGAACTTAGTCCTAGAAGATCAAGCCGACTCGAATTGGATTTGAACAGTATTGGTGATGATGGTGATGCCCAACCTTCTGATCAGAGAATGGAGGGACAGCTCTTTGATGGCAGAAATGGCCATTGGAGCTCATCACCTGCATCAACATCATCATCAATGCAACCTTCTGTAAGAAACATTGATTTGAATGACAGGCCATACTTTCAAACTGATTTGGTTGACCAAGGGCCCAGTAAGTATGCTCATAGTATTGATTCATATGGGGGGTCTAGATCTGATGGTCCTGTTATCTCTATCTTGGGTACAAAGGTGGAAGTTGGGAGAAGAGAATTTGTTTCTCATTCTGTGTCTTTGCCAAATGGCAAGGCTATGGAGCCTGTAGTGGATCTCGCAATGTCAAGAGCAGGTGGAGTTTTTGGGATGGGACCCACAGTATCCTACAATCATTCACATGGTTTTGGGTATAATGGTCTTACATCAGCATCTGGTTTGTCTTTTTCATCGGCCATATATGGGTCGGGTGGCACAATACCATACATGGTGGACTCAAGGGGAGCTCCAGTTGTGCCTCAAGTTGTGGGATCTTCCTCAAGTCTTCTGTCATCTTACTCCCAGCCTTCATTCATCATGAGCATGACTGGTACACAACTTGGTTTAAATGGAGTTGGAACTTCACGCCCTAACTTTGACCTAAATTCTGGCTTTATGATTGATGGTGGGAATAGAGATGCATTGACTGCAAGGCAATTTTTCTTCCCTGGTCAGAGCAGGGCTATCGAGGAGCATGTAAGGACCATTCCACAACCCTCAAGTTCTGGGGTTGGTGTGAAAAGGAAAGAACCAGACAGTGGGCGGGAAACATACCCAATGAGCCACAAACATCCGCAACCTCCATGGAAGTAG 3030 0.4409 MTLEDFFTLTEMKDGLTAPSRVQELVSVMQKEKDSVIKNAGDATRQWAAVASTIAATENKDCLDLFIQLDGLWFINRWLTEAQNFGLDPNDGFIEESITALLRAVEKLHLDSEKLTSSGIWVTVRNLLGHHSSRVQDRARILCDSWKVSGSSDVDFHEVKPVKVNDGSDKTVREEGQPSSVDEAGNDKDHASGLVEGEKSPLRSSDSLLPEVVNVQKQTSIHSPVSLDHEDVKVRSPDHPANVSTSVQEVASIKEGLPSCAVDGTTSEGTGSFPVQKQGNVEGQSDLLKFNDSSEKEKQEQSGNVPPEKIVAEENTLASSKPELGPVSMDATEVEALESVKEPALQHNIEDNRDAVCHKITASGSVRIATPDRKSGPANIGAIHSSSPQPLNTEEKDDDCSSHALHDSSVSGSKSGKPEVIETSFSKTDYVRAVKEGKGYVSNEGDDTSNGSDSVKPGRVPRSPNMIDKKSSDIELDYGIVDALEVARQVAQQVRREVCSSSSEKISEGGNQQPGSPDSIKREDVHTCIPPEEVASRQSCSAEASPEEEGHATSDIVEAEPECIPTMESLQVTKAAPDPGGNSDKIQCAFDLNEELGSDDMDVSANAMSTPIPVVSASKPAATPELPAAPLQFEGTLGWKGSAATSAFRPASPRKNSDSEKNFSVGGNSEISKQRQDWLDIDLNVAEDEDGLGKQVAESSSLPSGQSSVELSPRRSSRLELDLNSIGDDGDAQPSDQRMEGQLFDGRNGHWSSSPASTSSSMQPSVRNIDLNDRPYFQTDLVDQGPSKYAHSIDSYGGSRSDGPVISILGTKVEVGRREFVSHSVSLPNGKAMEPVVDLAMSRAGGVFGMGPTVSYNHSHGFGYNGLTSASGLSFSSAIYGSGGTIPYMVDSRGAPVVPQVVGSSSSLLSSYSQPSFIMSMTGTQLGLNGVGTSRPNFDLNSGFMIDGGNRDALTARQFFFPGQSRAIEEHVRTIPQPSSSGVGVKRKEPDSGRETYPMSHKHPQPPWK 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2819 1009 MobiDBLite consensus disorder prediction 972 1009 - -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 644 675 - -
Dere05g2819 1009 ProSiteProfiles TFIIS N-terminal domain profile. 81 153 IPR017923 -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 495 518 - -
Dere05g2819 1009 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 148 IPR035441 -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 649 674 - -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 405 422 - -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 289 303 - -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 495 586 - -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 160 196 - -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 160 243 - -
Dere05g2819 1009 Pfam TFIIS helical bundle-like domain 101 147 IPR017923 -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 747 768 - -
Dere05g2819 1009 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 150 IPR035441 -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 264 288 - -
Dere05g2819 1009 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 1009 - -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 207 223 - -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 362 472 - -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 697 714 - -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 264 330 - -
Dere05g2819 1009 MobiDBLite consensus disorder prediction 691 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2819 Dere-ChrDere05 38839172 38842201 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Dere05g2819 Med26 6.4e-07 No_clan