Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2810 ATGGATCGCCTGGCACTTATGTTTTCATTCGTATTAACACTTCATATATCAGCATCAGGAGTAATTTCTACCACATTCACATTAGTTAACAAATGCGAGTACACAGTATGGCCAGGCATTCTATCGAACGCCGGAGTTGCGCCTCTTTCAACCACCGGCTTCGTTCTGCAATCGGGAGAGTCTAAGACAATCTCCGCACCTACTTCTTGGGGTGGTCGCTTCTGGGGTCGAACTCTCTGCTCCCAAGACTCCACCGGCAAGTTCTCCTGCGTCACAGGTGATTGCGACTCGGGCAAGCTTGAATGCGCCGGCAATGGAGCCACGCCGCCGGCCACGTTGGCAGAGTTCACTTTGGATGGCTATGGCGGCCGTGATTTCTTCGATGTCAGCCTGGTAGACGGCTACAACGTCCCTATGCTAGTCGTCCCTCAAGGGGGTTCCGGCGACAACTGCACCAGTACGGGTTGCGTTGTGGATCTGAACGGCGCGTGTCCTGCAGAGCTCAAGGTTGCGAGCGTGGACGGCCAAAAAGGGGTGGCGTGCAAGAGCGCTTGCGAGGCATTTGGCTCGCCTCAATACTGCTGCAGCGGCGCCTATGCGACCCCAGACACTTGCAAGCCATCCTCCTACTCCGAGATATTCAAGAGCGCTTGCCCACGCGCCTACAGCTACGCGTACGACGACAAGACGAGCACATTTACTTGTGCCTCCGCAGATTATGCCATAACCTTCTGTCCTACACCTAACACCAGCCAGAAGGCATCCCAAGGACTTGACGACGCGAGCACACCTACCTCTCCCAACTCATCAATCACTAACAGCACAGTTGTGTATGAAGGCGCTTTTGATCAGAGTGAGATATCAGGGATCGAGGGTGGCCACGTGTCTATTGCCAGCATTGTCAGTGTGGCAGTGACCGTTTGGCTTTGGTCCCCTCTCTTCTAA 945 0.5439 MDRLALMFSFVLTLHISASGVISTTFTLVNKCEYTVWPGILSNAGVAPLSTTGFVLQSGESKTISAPTSWGGRFWGRTLCSQDSTGKFSCVTGDCDSGKLECAGNGATPPATLAEFTLDGYGGRDFFDVSLVDGYNVPMLVVPQGGSGDNCTSTGCVVDLNGACPAELKVASVDGQKGVACKSACEAFGSPQYCCSGAYATPDTCKPSSYSEIFKSACPRAYSYAYDDKTSTFTCASADYAITFCPTPNTSQKASQGLDDASTPTSPNSSITNSTVVYEGAFDQSEISGIEGGHVSIASIVSVAVTVWLWSPLF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2810 314 PIRSF PR5 1 285 IPR001938 -
Dere05g2810 314 SUPERFAMILY Osmotin, thaumatin-like protein 24 246 IPR037176 -
Dere05g2810 314 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Dere05g2810 314 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Dere05g2810 314 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Dere05g2810 314 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Dere05g2810 314 SMART tha2 26 246 IPR001938 -
Dere05g2810 314 Pfam Thaumatin family 30 246 IPR001938 -
Dere05g2810 314 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Dere05g2810 314 CDD TLP-PA 25 245 - -
Dere05g2810 314 Gene3D Thaumatin 24 246 IPR037176 -
Dere05g2810 314 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Dere05g2810 314 PANTHER OS03G0233200 PROTEIN 7 246 IPR001938 -
Dere05g2810 314 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2810 Dere-ChrDere05 38759550 38760876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2810 4 247 Receptor kinase-like Gene Family AT5G38280 54.251 1.20e-93 290