Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2785 ATGGCTTTCGTCGATGATAAGATTAAAACAGGAGGACTAGTTGTTGGGGGTCAATCTCTAGTTGCCGAGATGAAGATGTTGAAAGAAATGCAGGATCAATCTGGGGTCCGAAAGTCTATAAATTCCGAGCTATGGCATGCTTGCGCTGGCCCACTTGTAAGCTTACCTCAGGTGGGGAGTCTGGTGTATTATTTCCCTCAGGGACACAGCGAACAGGTAGCAGCTTCCACCAGAAGAACAGCAACCTCTCAGATTCCAAACTATCCAAATCTTCAATCTCAGTTGCTTTGCCAAGTTCAACATGTAGCACTTCATGCGGACAAAGATACAGACGAAATATATGCCCAAATGAGTCTTCAACCATTGAATTCTGAAAAAGATGTCTTTCCTATATCTGAGTTTGGGATAAAGCCCAGTAAACATCCAAGTGAATTTTTCTGCAAAACATTGACTGCTAGTGACACAAGCACGCACGGTGGCTTTTCAGTACCTCGCAGGGCTGCGGAAAAGCTCTTTCCTCTCTTGGATTACACCATTCAACCCCCAACTCAGGAACTTGTTGTCCGGGACTTGCATGATAATACCTGGACATTCCGACATATATACCGAGGTCAGCCGAAGAGACATCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTAAAAGCTGGAGATGCTGTTCTTTTTATCAGGGACGAGAAATCACAATTGCTGGTTGGTGTAAGGCGTGCTAATCGTCAACAGACAACATTGCCTTCATCTGTCCTTTCTGCTGATAGCATGCATATTGGTGTACTTGCTGCTGCAGCTCATGCTGCTGCTAATCAGAGCCCATTTACTATTTTCTACAACCCAAGGGCATGCCCTTCAGAATTTGTTATTCCACTGGCTAAATACAGAAAAGCTGTATATAGTACCCAACTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGAAAGCGCAGATATATGGGCACAATAGTTGGTATCAGCGACTTGGATCCTTTGAGGTGGCCTGGTTCCAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCGGGGTGTGGCGATAAGCAGAATAGAGTTAGTTCGTGGGAAATTGAGACTCCTGAAAGTCTTTTTATCTTTCCTTCTTTGACTTCAGGTCTGAAACGACCATTTCAATCTGGATCTTTGGAAAATGAGTGGGGGACTTTGATAAGAAGGCCGTTTATACAAGTTCCTGAAAATGCAAATGTGGAGCTCTCAAATTCTATCTCAAATCTATACTTGGAACACCTAATGAAAGTTCTTTTTAAACCTCAACTTTTTAACAATCCTGGAGCCTTTCCATCAGCCATGCAGCAAGAATCTTCTGCCAAGAGTGATCCTTTAGAGGAGTTGAAGATCACACTCACAACAGAAAACCAAAATGCTCGTCTTGCATGTTCAGGGAGCATACTGCCTAAAAGTTTAGATCATTCTCAATCCTTCCCGGACCAGTCTAATGCCTTAAACTTGCATTCCCTGTTGAAAAGTGATCAAGCTGGAAAATTGCATCCTCTGCCCAAAATTGAGAATGCTCAATCCTCTGGAGCTGTTTCTGATAAGACAAAATTGGAACCTGTGGATTTAACTGATCGTATAATTGACTTACCTTCTATGGAAGGTTGCAACATGGAAAAAGTGGCGGCTAACCCTGTGAATTCACTAGGCCATGCAAGCCAATTGACGTTCCTTAACCAAAACCAGAGCCTATGGCCCACGCAGCCTCAGTTTGAATCATCAATATCTCTTTCTCAACTGGTTGATGTTCCTCAATCTGATTACGGTATTTTAAATGGCCTACTTCCTCAACCAGACGTTGATGAATGGATGTTGTATTCTTCTTGCCAACCCTTTGCCGGAATAAGCAGATCAACTGGTCCTTTGTCAACTTTGCAAGAACAGTCTGCACTTCTCCCTCAAGCAGTTAACACCCCTTTACCCTCCATGAGCCAAGAAATGTGGGATCATTATCTAAAAAATTTGAAGTTGTTACCTCAAGCAGACCAGCTGACACCCTCGTCTCAGCAAGGGCTACAAGGGCTACATAACTTTAATGGTATATCCAATTCAAACAATTTGAAGGATCTATCAGCTGAGAGCAATAATCAAAGTGGGGTGTACAGTAGTGTTAATGTCGATGTTAGTAACTGTGCAAGTACCCTGGTTGATCCTTCTACTTCGAGTACGATTTTAGATGAGTTTTGCACGCTGAAGGATGGGGATTTTCAGAACCCATCAGATTGCATGGTAGGCAACCTAAGTTCGAGCCAGGATGTCCAATCTCAGATAACCTCGGCAAGTCTGGCAGAGTCGCATGTTTTTCCACTGCAAGACATCCCAGACAACTCAGGCGGTACATCTTCAAGCCACGTTGATTTTGATGAAAGCAACTTTCTGCAAAATAACTCATGGCAGCAAGTTGCTGCACCCATGCGAACCTACACAAAGGTTCAAAAGGCTGGATCAGTAGGAAGATCAATTGATGTAACCACTTTTAAGAACTACGAGGGACTGATCTCCGCAATTGAACGCATGTTTGGACTTGAGGGTCTGCTGAATGACACTAGAGGTTCAGGATGGAAATTGGTATACGTAGATTATGAGAACGATGTTCTACTTGTTGGAGATGATCCCTGGGAGGAATTCGTGGGGTGTGTGCGCTGCATAAGGATTTTATCGCCTTTGGAAGTTCAACAGATGAGCGAGGAGGGAATGAAGCTTCTTAACAGTGCTGCGGTGCAACAGATCAATGGCTCCATGTCGGGTGGCTGCACTTAG 2829 0.4387 MAFVDDKIKTGGLVVGGQSLVAEMKMLKEMQDQSGVRKSINSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLQSQLLCQVQHVALHADKDTDEIYAQMSLQPLNSEKDVFPISEFGIKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPLLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANQSPFTIFYNPRACPSEFVIPLAKYRKAVYSTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSSWEIETPESLFIFPSLTSGLKRPFQSGSLENEWGTLIRRPFIQVPENANVELSNSISNLYLEHLMKVLFKPQLFNNPGAFPSAMQQESSAKSDPLEELKITLTTENQNARLACSGSILPKSLDHSQSFPDQSNALNLHSLLKSDQAGKLHPLPKIENAQSSGAVSDKTKLEPVDLTDRIIDLPSMEGCNMEKVAANPVNSLGHASQLTFLNQNQSLWPTQPQFESSISLSQLVDVPQSDYGILNGLLPQPDVDEWMLYSSCQPFAGISRSTGPLSTLQEQSALLPQAVNTPLPSMSQEMWDHYLKNLKLLPQADQLTPSSQQGLQGLHNFNGISNSNNLKDLSAESNNQSGVYSSVNVDVSNCASTLVDPSTSSTILDEFCTLKDGDFQNPSDCMVGNLSSSQDVQSQITSASLAESHVFPLQDIPDNSGGTSSSHVDFDESNFLQNNSWQQVAAPMRTYTKVQKAGSVGRSIDVTTFKNYEGLISAIERMFGLEGLLNDTRGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPLEVQQMSEEGMKLLNSAAVQQINGSMSGGCT 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2785 942 CDD B3_DNA 145 246 IPR003340 GO:0003677
Dere05g2785 942 Gene3D - 310 382 - -
Dere05g2785 942 FunFam Auxin response factor 310 382 - -
Dere05g2785 942 Pfam AUX/IAA family 822 911 IPR033389 -
Dere05g2785 942 Gene3D - 144 247 IPR015300 -
Dere05g2785 942 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 919 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere05g2785 942 ProSiteProfiles PB1 domain profile. 829 913 IPR000270 GO:0005515
Dere05g2785 942 SMART B3_2 146 248 IPR003340 GO:0003677
Dere05g2785 942 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Dere05g2785 942 SUPERFAMILY CAD & PB1 domains 830 908 - -
Dere05g2785 942 SUPERFAMILY DNA-binding pseudobarrel domain 135 275 IPR015300 -
Dere05g2785 942 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Dere05g2785 942 FunFam Auxin response factor 144 248 - -
Dere05g2785 942 FunFam Auxin response factor 824 918 - -
Dere05g2785 942 Gene3D - 825 918 - -
Dere05g2785 942 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2785 Dere-ChrDere05 38526377 38531801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2785 19 938 B3 DNA Binding Superfamily AT1G19850 58.705 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere05g2785 AUX_IAA 5e-10 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2785 05 38526377 38531801 Dere05g2785 05 38526377 38531801 ECH