Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2768 ATGAAGATCCATTGCGACGTCTGCAACAAGCACGAGGCTTCCCTCTTCTGCACCGCCGACGAGGCCGCCCTATGTGACGCCTGCGACCACCGTGTCCACCATGCCAACAAGCTCGCCTCCAAGCACCAACGCTTCTCTCTTCACCGCCCTTCTCCTAACCAATTCCCTCTCTGCGATGTTTGCCTGGAGAAAAGAGCTTTCGTGTTCTGTCAACAGGACAGAGCAATTCTGTGCAAAGATTGTGACTTGCCGATTCACTCTGCCAACGAGCACACCCAGAAGCATAATAGGTTTCTTCTTACTGGAATTAAGCTCTCTGCTGCAGCTACGGTTTATTCACCATCAACCTCCAATCCCGTTTTGACCAGTAGTTCTGATTCTTTGTCCAATTCCAAGTCGCAAAATTTAGCAAAGAACTCTGTTTCTGCTTCTTCTGCCATCTCACATCCCACTTTGATGGCCAAGACTTCGCCTTCAACAGCATCAACAGTTTGCGCAATTAGCAAAGATGGGGAAAACTTGTTAACGAACGTAGGGTTTGCTTCCACAAGCAGTATATCTGAGTATTTGATAGACACTCTTCCGGGCTGGCAGGTCGACGACTTTCTCGATTCCTCTGCTGTTCCGTTTGGTTTCAGTAAGAGTGATGATATATTGGCGTTGCTTGATGCTGATATTGAGAGCAACGTAAGTTCTTTCTCGCCCGAGAGTATGGGGATCTGGGTTCCTCAAGCACCTTCTACTCTTCATACGGCTCAAATGGATCGGCAGATTAGGTTCCACGAGACAGAAGAGGCGACCAACATTGAAGCCAGCAGATCAAGTCCGAGGGATGATAATTTCTTAGTTCCACAGATTAGCCCGCCTTCTATTGGGTCCAAGAGATCCAGACTTCTGTGGAATGTGGGGAAGAAAATGATGATTTTGTTATATGCAATCGCAAACAAAAACTGTAAAATCTTCCTCCTTGTGGTCAGGGACACATCACAGAACGGGACTGATTTAGTTGCTAAATAATTTGGGCAGCTGGTATCTAGTAAGGTCTGGCCTCACTTTCCTGACTCTTTTGCCCGGAAAGCTAAAACTGAGCAGGAGGGCAGTGCAGAATGTGTAAGGACCTGGCAGGGACTTCTGGTTCAAGAGGTTCACTGGAGATATGTAACTAATCAACACTCCGACGCATTGGTACTACTGTCAATAATTATTGATATTTGA 1215 0.4683 MKIHCDVCNKHEASLFCTADEAALCDACDHRVHHANKLASKHQRFSLHRPSPNQFPLCDVCLEKRAFVFCQQDRAILCKDCDLPIHSANEHTQKHNRFLLTGIKLSAAATVYSPSTSNPVLTSSSDSLSNSKSQNLAKNSVSASSAISHPTLMAKTSPSTASTVCAISKDGENLLTNVGFASTSSISEYLIDTLPGWQVDDFLDSSAVPFGFSKSDDILALLDADIESNVSSFSPESMGIWVPQAPSTLHTAQMDRQIRFHETEEATNIEASRSSPRDDNFLVPQISPPSIGSKRSRLLWNVGKKMMILLYAIANKNCKIFLLVVRDTSQNGTDLVAKXFGQLVSSKVWPHFPDSFARKAKTEQEGSAECVRTWQGLLVQEVHWRYVTNQHSDALVLLSIIIDI 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2768 404 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dere05g2768 404 FunFam B-box zinc finger protein 21 1 98 - -
Dere05g2768 404 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Dere05g2768 404 CDD Bbox1_BBX-like 5 47 - -
Dere05g2768 404 CDD Bbox1_BBX-like 57 100 - -
Dere05g2768 404 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 289 - -
Dere05g2768 404 Gene3D Classic Zinc Finger 1 99 - -
Dere05g2768 404 SMART bboxneu5 53 100 IPR000315 GO:0008270
Dere05g2768 404 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dere05g2768 404 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2768 Dere-ChrDere05 38367997 38370030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2768 1 300 C2C2-CO-like Transcription Factor Family AT1G75540 44.477 3.00e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Dere05g2768 zf-B_box 2.8e-05 No_clan