Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2765 ATGGCTGGGTTCTTCTCTCTAGGTCCACAGAACAAACAAGAAGAAGAAAAAGAAGATAACAACAACAGTAACAGCCTATTTTTGTTCAGGAACGAGGAGATCTACAACAAAGGATTTGAGATATGGCCACAGTCTTATCACCCACAACACAACTTGAACAACTACTACTCGTTTGGGGCGGGTCCTAGTCGTAGAAACTCCTCCCACGACGACGTCGTCTCTGACGACTCAACGAGGTTCGGATTCACGGTCATGAGGTCTGGAGGTCTAGGAGGCGGCATGAACTGTCAGGATTGTGGGAACCAAGCTAAGAAAGACTGTGCACATCTCAGATGTAGGACTTGCTGTAAGAGTCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCCGCAGCCAAACGCCGTGAACGACAGCAACAACTCGCAGCGTTGCAGCAACAGCAACAGCATCAGGACCAACAATTTAGGGGAGATAATTCAAAGCGACACAGAGAAAATCAAGCTTCGGGCCCTCTTGCCTGCGCTCCATTAATGCCTATCGCCACAACAGGGTTGGAACTGGGACAATTCCCAGCAGAGGTAAACTCTTCGACTGTGTTTCGCTGTGTGAGAGTAAGCGCAATGGACAGTCCAGACGAGCAGTATGCGTATCAAACAGCTGTGAACATCGGAGGGCACGTTTTCAAGGGAATTCTGTATGACCAAGGCCCTGAAGGTGCTTACACCACAGGTGGTGAGAGCTCCACCGGTGGAGCTGAAGCTCAACAACTGAACCTCATAACCGCCGCAACCACCACAGGCACCGCAACAACCAGCGCCAACCCATTTGACCCTTCTTCACTATACCCGGCTCCGCTCAATGCCTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGGTCCTAG 915 0.5104 MAGFFSLGPQNKQEEEKEDNNNSNSLFLFRNEEIYNKGFEIWPQSYHPQHNLNNYYSFGAGPSRRNSSHDDVVSDDSTRFGFTVMRSGGLGGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQQHQDQQFRGDNSKRHRENQASGPLACAPLMPIATTGLELGQFPAEVNSSTVFRCVRVSAMDSPDEQYAYQTAVNIGGHVFKGILYDQGPEGAYTTGGESSTGGAEAQQLNLITAATTTGTATTSANPFDPSSLYPAPLNAFMAGTQFFPPPRS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2765 304 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 290 IPR007818 GO:0003700|GO:0006355
Dere05g2765 304 MobiDBLite consensus disorder prediction 1 23 - -
Dere05g2765 304 NCBIfam putative zinc finger domain, LRP1 type 95 137 IPR006510 -
Dere05g2765 304 Pfam Domain of unknown function (DUF702) 93 241 - -
Dere05g2765 304 NCBIfam LRP1 C-terminal domain 192 240 IPR006511 -
Dere05g2765 304 MobiDBLite consensus disorder prediction 149 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2765 Dere-ChrDere05 38337622 38339002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2765 1 304 C2H2 Transcription Factor Family AT1G75520 48.229 7.57e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dere05g2765 DUF702 4.8e-66 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2765 05 38337622 38339002 Dere04g0126 04 1315459 1316819 CCT