Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2762 ATGGAAAATATCACATCTCCATTACTCCAAATGGGTCGCCATTCGCTCTTGGCTCTCCTCATCTTCGCCCTCTTATACGCCGTGGTGGCAACGACCGAGTTCATCGACGAAGACGATGACCTTTTAATCCGTCAGGTCGTTTCGGACGATGAAGATCACTTGCTCAACACCGAGCACCACTTCTCCAACTTCAAGGCTAAGTTCGGCAAGACCTATGCTACAAGAGAGGAGCACGACTATCGCTTCGGGGTCTTTAAGGCTAACTTGCGCCGAGCCAGGTTACACCAGAATCTCGATCCCTCCGCCGTCCACGGCGTCACCAAATTCTCCGATCTGACCCCCTCCGAATTTCGCCAGCAGTTCCTTGGCCTTAGGCCTCTTCGTCTTCCCGCCGATGCTCACAAGGCTCCGATCCTCCCTACCAATGATATCCCTACTGATTTCGATTGGCGTGATCATGGAGCCGTCACTCCCGTCAAGGACCAGGGCGCATGTGGATCATGCTGGTCGTTTAGCGCCACAGGAGCTCTGGAAGGAGCTCATTTTCTAAGGACTGGAGAGCTCGTGAGCCTTAGTGAGCAACAGCTCGTAGATTGCGACCACGAGTGTGATCCGGAAGAATATGGAGCATGTGACGCAGGCTGTGGTGGTGGGTTGATGACCACTGCATTTGATTACACACTCAAGGCTGGGGGACTAGAGCGAGAAGAGGATTATCCATACACTGGAACAGACCGTGGCCCGTGCAAGTTTGACAACAGCAAAATTGCTGCTTCTGTATCTAATTTCAGTGTGATTACCACTGATGAAGATCAAATTGCTGCAAATCTGGTGAAGAATGGTCCTCTTGCAGTTGGTATCAATGCAGTTTTTATGCAGACATACATTGGCGGCGTTTCATGCCCATTCATCTGCACAAAACGTTTGGATCATGGGGTTCTTCTAGTGGGATATGGCTCTGCTGGTTATGCTCCCATTCGGTTTAAGGAAAAACCTTACTGGATTATAAAGAATTCATGGGGACAGAACTGGGGAGAGGACGGATATTACAAGATCTGCAGAGGTCGAAATATTTGTGGGGTGGATTCCATGGTCTCTACCGTAACTGCGTTGCATGCTTCTAGTGAATAA 1131 0.4987 MENITSPLLQMGRHSLLALLIFALLYAVVATTEFIDEDDDLLIRQVVSDDEDHLLNTEHHFSNFKAKFGKTYATREEHDYRFGVFKANLRRARLHQNLDPSAVHGVTKFSDLTPSEFRQQFLGLRPLRLPADAHKAPILPTNDIPTDFDWRDHGAVTPVKDQGACGSCWSFSATGALEGAHFLRTGELVSLSEQQLVDCDHECDPEEYGACDAGCGGGLMTTAFDYTLKAGGLEREEDYPYTGTDRGPCKFDNSKIAASVSNFSVITTDEDQIAANLVKNGPLAVGINAVFMQTYIGGVSCPFICTKRLDHGVLLVGYGSAGYAPIRFKEKPYWIIKNSWGQNWGEDGYYKICRGRNICGVDSMVSTVTALHASSE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2762 376 PRINTS Papain cysteine protease (C1) family signature 162 177 IPR000668 GO:0006508|GO:0008234
Dere05g2762 376 PRINTS Papain cysteine protease (C1) family signature 333 339 IPR000668 GO:0006508|GO:0008234
Dere05g2762 376 PRINTS Papain cysteine protease (C1) family signature 311 321 IPR000668 GO:0006508|GO:0008234
Dere05g2762 376 SMART Inhibitor_I29_2 61 117 IPR013201 -
Dere05g2762 376 Pfam Cathepsin propeptide inhibitor domain (I29) 61 117 IPR013201 -
Dere05g2762 376 SMART pept_c1 144 369 IPR000668 GO:0006508|GO:0008234
Dere05g2762 376 FunFam Cysteine protease RD19A 41 369 - -
Dere05g2762 376 Pfam Papain family cysteine protease 144 367 IPR000668 GO:0006508|GO:0008234
Dere05g2762 376 CDD Peptidase_C1A 145 368 IPR039417 -
Dere05g2762 376 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 162 173 IPR000169 -
Dere05g2762 376 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 309 319 IPR025660 -
Dere05g2762 376 Gene3D Cysteine proteinases 36 369 - -
Dere05g2762 376 SUPERFAMILY Cysteine proteinases 58 368 IPR038765 -
Dere05g2762 376 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 333 352 IPR025661 -
Dere05g2762 376 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 56 362 IPR013128 GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2762 Dere-ChrDere05 38312513 38314291 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2762 05 38312513 38314291 Dere04g0129 04 1338089 1342159 CCT