Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2754 ATGGGAATTGAGGAGCGAAAGCAGGTGAAAAAGCCAGGCCAGGCCAGCTCCAGAAAAGGGTGTATGAGAGGCAAAGGAGGCCCTGAGAATGCAAGCTGCACCTACAAAGGTGTTCGTCAGAGGACTTGGGGCAAATGGGTCGCTGAAATTCGTGAACCCAATCGTGGGGCTCGCCTCTGGCTCGGCACTTTCGAGACATCCCATGAGGCTGCTTTGGCTTATGATGCTGCTGCTCGTAAGCTTTATGGATCTGAGGCCAAGCTCAATCTCCCTCACCTCTCTCTCAATTCTCAGTCTCAATCCCCGCCACATTCCTCTGTCCCCACCCAAATTCCTCAGGTTATGCCAAACCACCACCCTATGCCTCAGCTTCACCAGAACTTGGCAATACCCCCCTGCTCTTTCAATACCATCTCCAACAATACTCCAATGATGTCCATGGCTTCTCAGCAAGTTGGACCACTATATAGCAACAACAGTATTTCAAGCTCTAGCTCTAGCTCTAGCTCTGGCTCTGCCATCTCTGTTCCCTTCAGTGCTGGGGAGGACATCAAGCCCATTGAGAAGGAGGATGATTTTGGTCAGTTTTGGGGGACATTGAACGAGAGCCTGCCAGTGCCTGAGTTTGATAACTCGATTTGGGCAGAAGCTGCTATGTCTCTGGATTATCCTGTAATGTCAGATGCAGGCATGTATGCGACTGGGAATTTTGGTGATGTGGGTTCCTGGGACTCTATGCAAACTCCGTGGTGCATTTCAGTGAAGGTCACGACGCCGTGGTCATTTTAG 789 0.5082 MGIEERKQVKKPGQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSEAKLNLPHLSLNSQSQSPPHSSVPTQIPQVMPNHHPMPQLHQNLAIPPCSFNTISNNTPMMSMASQQVGPLYSNNSISSSSSSSSSGSAISVPFSAGEDIKPIEKEDDFGQFWGTLNESLPVPEFDNSIWAEAAMSLDYPVMSDAGMYATGNFGDVGSWDSMQTPWCISVKVTTPWSF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2754 262 CDD AP2 33 93 IPR001471 GO:0003700|GO:0006355
Dere05g2754 262 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Dere05g2754 262 MobiDBLite consensus disorder prediction 1 33 - -
Dere05g2754 262 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Dere05g2754 262 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Dere05g2754 262 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Dere05g2754 262 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Dere05g2754 262 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Dere05g2754 262 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 166 - -
Dere05g2754 262 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Dere05g2754 262 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2754 Dere-ChrDere05 38230742 38231702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2754 14 249 AP2-EREBP Transcription Factor Family AT1G75490 45.417 9.61e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere05g2754 AP2 8.4e-15 CL0081