Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2753 ATGGTGTCTCTAATTTTTCCACCATCTTCAGCTTCTTTTTCTAGCACTCCTTTCCATCAAACTTCCTTGTTCTCCACTCGCTTGCTTCCTCGAAGGAATAGTCAAGAGAGATGCAGTTCTAAAAATTATGGATGGTATACGGTTAAGTGCAGATTTCTCAGTGTCAATGTGGCCCCTTCCTCAAGGCCGTCGACAGTGATCAAGGAGCCTCACAAGTACTTTGATCAGGCAATCATCACAGTTCGTTCAGGTGATGGAGGCCATGGAGCAGTACTTAATATGCCCAACCAGAGAACTAGTAGTTCACCAGGCAAACAGCAAAAGGAAAAGACAAGGAAGAAAAGCCCCTATAGAAGGGACTTCGATGGATCACTTATCCTACCTACAGGTGGGCATGGAGGGGATGTGGTGATTTATGCGGATGAAGAAAAAGATTCATTATTGGAATTCCACAGCAAGAGCCGCTATAATGCAAAACGTGGTGGCAATGTTGATGCAATGGGTATTTTGAGCTCACAACTGCATGATGGACTTGCTGCCCCAACTCTGCGCATTCCAGTGCCTGTAGGTACTGTTGTAAAACGCAAGCGTGGGAAATTGCTGGCTGATCTGGCTCGACCAGGTGATGAAATTCTTGTTGCAAGGGGTGGACAAGGAGGGATTTGCTTGTTAGATATGCCACAGCATAAAAGAAAAATGATGATGGCGTTGACAACAAATGTGATGAGAGATGATACTGATAAGGTTTTAGTTCTTGGTCAATCAGGTGAGGAAGTTAGCTTGGAGTTGATCCTACGAGTTGTTGCTGATGTTGGTCTAGTTGGACTTCCAAATGCTGGAAAATCAACACTTCTGGCAGCCATTACGCTAGCGAAACCTGATATTGCTGATTATCCTTTCACGACACTAATGCCAAATCTTGGCCGCCTTGGTGGTGACCCCAGCTTGGGGGCTGGGATGTATTCATCTGAAGCTACATTAGCAGATTTGCCTGGCCTTATAGAGGGTGCTCACTTAGGAAAGGGCCTTGGTCGCAATTTCTTGAGGCACCTCAGGAGGACCCGTCTACTGGTCCATGTTGTTGATGCAGCCGCAGAGAACCCCATTAATGACTATAGAACTGTCAGGGAAGAGTTGCGCATGTATAATCCTGAGTACCTTTACCGACCATACATTGTGGTTTTAAATAAGATTGACCTTCCAGAGGCAAAGGACAGGCTTCCATCATTGACTGAAGAAATACTGAGAATTGGGAGCATCGGGAATCCTTCTGAAGAAAAACTGGGCTCTGAAGTTCCAGTTCAATCATTATCCAATGAAGGCAACATCAAGGAAAAGAAACTTGAGGATTATCCACCGCCCCTGTCCGTTGTGGGAGTTAGTTTACTAAAGGGCATCAGGATAGATGATCTGTTGAAGGAGATCAGGGCAGCTTTAAGGAAGTGTATGGATTCCGCTGAAGCATCATTGGTTTTCAGTTTGCCCTCATAA 1491 0.4527 MVSLIFPPSSASFSSTPFHQTSLFSTRLLPRRNSQERCSSKNYGWYTVKCRFLSVNVAPSSRPSTVIKEPHKYFDQAIITVRSGDGGHGAVLNMPNQRTSSSPGKQQKEKTRKKSPYRRDFDGSLILPTGGHGGDVVIYADEEKDSLLEFHSKSRYNAKRGGNVDAMGILSSQLHDGLAAPTLRIPVPVGTVVKRKRGKLLADLARPGDEILVARGGQGGICLLDMPQHKRKMMMALTTNVMRDDTDKVLVLGQSGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLGGDPSLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAENPINDYRTVREELRMYNPEYLYRPYIVVLNKIDLPEAKDRLPSLTEEILRIGSIGNPSEEKLGSEVPVQSLSNEGNIKEKKLEDYPPPLSVVGVSLLKGIRIDDLLKEIRAALRKCMDSAEASLVFSLPS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2753 496 Pfam GTP1/OBG 129 265 IPR006169 -
Dere05g2753 496 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 68 477 IPR045086 GO:0003924|GO:0005525
Dere05g2753 496 ProSiteProfiles Obg domain profile. 71 268 IPR006169 -
Dere05g2753 496 ProSitePatterns GTP1/OBG family signature. 329 342 IPR006074 GO:0005525
Dere05g2753 496 Pfam 50S ribosome-binding GTPase 270 397 IPR006073 GO:0005525
Dere05g2753 496 MobiDBLite consensus disorder prediction 105 120 - -
Dere05g2753 496 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 269 480 IPR031167 GO:0005525
Dere05g2753 496 Gene3D GTP1/OBG domain 72 267 IPR036726 -
Dere05g2753 496 SUPERFAMILY Obg GTP-binding protein N-terminal domain 73 232 IPR036726 -
Dere05g2753 496 CDD Obg 269 479 IPR031167 GO:0005525
Dere05g2753 496 MobiDBLite consensus disorder prediction 85 124 - -
Dere05g2753 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 482 IPR027417 -
Dere05g2753 496 Gene3D - 268 488 IPR027417 -
Dere05g2753 496 PRINTS GTP1/OBG GTP-binding protein family signature 327 342 IPR006073 GO:0005525
Dere05g2753 496 PRINTS GTP1/OBG GTP-binding protein family signature 292 310 IPR006073 GO:0005525
Dere05g2753 496 PRINTS GTP1/OBG GTP-binding protein family signature 344 362 IPR006073 GO:0005525
Dere05g2753 496 PRINTS GTP1/OBG GTP-binding protein family signature 271 291 IPR006073 GO:0005525
Dere05g2753 496 NCBIfam small GTP-binding protein domain 270 414 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2753 Dere-ChrDere05 38224377 38228723 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2753 05 38224377 38228723 Dere05g2753 05 38224377 38228723 ECH