Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2746 ATGATGTACCCGAACCAAGCTTTTTCTTCTGGGTCCTATGCGGAGATGTTGTCTGGGAATCATCTTTTACCTCATAACTACACCGAAACTGTAGGAGGCCAAAACGAGGTGAAGTTCATCACAGCTATGGGTGACACGGTGACTATGCAGTCTATTGATGGGCATTCCAACACTGCAACAGGTGATCCATCTGGCAACTCTTTCACAAGGGCACCATTAGGACTCGTTGATAGTGAACAAAACATACAGGGCCAGGGTTTATCTCTTAGCCTTGGGACACTCATGCCTCCTACTGTATCTGTCCCTCCCTTCCAATACCACTATCCCACCACCGGCTTCTCGTCGCTAATGACCACTTGTCTTCCAAACTTAAAGGGTACTGTTTCTTTAAAAGATGACGAGGCAAATGCTGAATGCATGGCATCTATATCTTCTGGAGGTTTTAACAACAACATCCAAAAGGAGGTTTTATACAATCCACAATCCTCCCTCTACCATAAGGAAGTTCACCCTGACCCATCTCTGCATGGAACGCAAGGTTTTGCAAACGCTGTCCTAAACTCGCAATACCTTAAAGCAGCACAGGAATTGCTAGATGAAATAGTTAATGTTCGAAAGGCTTTAAAGCAACCTGGATTGGAAAAACAAAAAGGTCTCTGTGACTTTGGATTAGATGGCTCTAAAGATTCTGAGGAAAAATCTACCAGTCAATCTGTGCAGATGTCTTCAGACCCTAATGCTTCTTCGGCCAATACTTTGTGTGAATTATCACCTGCAGAGCGGCAGAGTTTGTTGGATAAGAAGACAAAGCTTTTGTCCATGTTAGATGAGGTAGATAAAAGATACCGACAGTACTGCCATCAGATGCAAATTGTGGTGTCATCTTTCGATATGGTTGCTGGTTGTGGGGCAGCTGAACCATACACTGCACTTGCTTTGCGAACAATTTCTCGCCACTTTCGCTGTTTGCGTGATGCTATTAGCGGTCAAATTCAAGTGACTCAGAGGAGCCTTGGGGAACAAGAGGGAATACCTCGCCTCCGCTATGTTGACCAGCAGCTTAGGCAACAGAAGGCCCTTCAGCAGCTTGGCGTGATGCGACAGGCTTGGAGGCCTCAGAGGGGACTTCCTGAGAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAGCATTTCCTTCATCCTTACCCAAAGGATTCTGAGAAAATTATGCTGGCAAGGCAAACTGGCTTAACCAGGAACCAGGTGGCAAACTGGTTCATCAATGCACGGGTTCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAAGGAAGAGTTCGGTGATTCTGAGATGATGAGCTGCAATCTCTCATCCGAAGGTACTCCTAAAGCTCCAAGAGATAATTATGTTCAAATTTCTGATAATAAAGGGGAAGAGTCGCAGGACAACATAAAAACTGCTAATAGTGTACAACAGGGGCAACTTCATGAGTTGAAGTTGGACCATAGCTCCACTACAGAATTTGATACCGCTCACGGGGAAACTGTCATGCATTCTGGAATTACGAAATTGCAGGGTGATCAAAGGCCTAATATGAACAATACCCTTTATTCAAGCGGACCTATGCCAACCAACCAGAATGGTGATGGCTGCCTATTGCCTTCTGCTCCGGCCTCATATGATTTATCAGAGTTGGGTAGTTTTCCGGTGGGTGGCCATGTGTCCCTTGCATTGGAGTTGCGCAACTGTGAAACTGAGGGATTTGCCATGTCTGATAATTCTGTCAACAAACGACGTAATCAGACATTAGATTCTTCCCCAGAGAATGATTTGATTGATTATCATTTCACAGACACGGGAAAGCAACAAAACAGGTTTAGTAATCCTCATCTATTGCATGAATTCGTCGTCTAA 1896 0.4488 MMYPNQAFSSGSYAEMLSGNHLLPHNYTETVGGQNEVKFITAMGDTVTMQSIDGHSNTATGDPSGNSFTRAPLGLVDSEQNIQGQGLSLSLGTLMPPTVSVPPFQYHYPTTGFSSLMTTCLPNLKGTVSLKDDEANAECMASISSGGFNNNIQKEVLYNPQSSLYHKEVHPDPSLHGTQGFANAVLNSQYLKAAQELLDEIVNVRKALKQPGLEKQKGLCDFGLDGSKDSEEKSTSQSVQMSSDPNASSANTLCELSPAERQSLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMMSCNLSSEGTPKAPRDNYVQISDNKGEESQDNIKTANSVQQGQLHELKLDHSSTTEFDTAHGETVMHSGITKLQGDQRPNMNNTLYSSGPMPTNQNGDGCLLPSAPASYDLSELGSFPVGGHVSLALELRNCETEGFAMSDNSVNKRRNQTLDSSPENDLIDYHFTDTGKQQNRFSNPHLLHEFVV 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2746 631 CDD homeodomain 370 431 IPR001356 GO:0003677
Dere05g2746 631 MobiDBLite consensus disorder prediction 233 251 - -
Dere05g2746 631 SUPERFAMILY Homeodomain-like 371 438 IPR009057 -
Dere05g2746 631 SMART HOX_1 370 434 IPR001356 GO:0003677
Dere05g2746 631 Pfam Homeobox KN domain 387 426 IPR008422 GO:0003677|GO:0006355
Dere05g2746 631 SMART prehox3 179 329 IPR006563 -
Dere05g2746 631 ProSiteProfiles 'Homeobox' domain profile. 367 430 IPR001356 GO:0003677
Dere05g2746 631 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 115 467 - -
Dere05g2746 631 Pfam Associated with HOX 185 328 IPR006563 -
Dere05g2746 631 MobiDBLite consensus disorder prediction 224 251 - -
Dere05g2746 631 Gene3D - 367 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2746 Dere-ChrDere05 38173420 38175939 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2746 34 453 Homeobox Transcription Factor Family AT1G19700 49.324 1.33e-118 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere05g2746 POX 8.1e-50 No_clan