Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2744 ATGTCTAATCAATTTGAGAACCAAACTTTTGATGCTTATGGTTCTTCCTTAAGAAGCAGCAATGCATTTCCTGAGGCCCTGGCAGTTTTCCCAAGCATCCAAGCTCCGGTACTAGCAGAGGGTTCTGAAATCAGCCACACTAGACATTTAATGGATCTTCTTGGAGCACCTACTGAGAGCAATAACCAACAACCTCAGCCCCAGGGGCTCTCTCTTTCTTTAGGCTCTCATATGCTCGTCCATTCTGAAGATTACAGGCAGCCTTCCTTGAATCCGGGCCTTGTGAGCCCGAATTACTTTATGTCTGGAGAAGAATCAAGGGAACCTTGTAATCCAGGAGTGGATCATTTAACTAGCGACTATTCCTTCACCAACACCTCTTTTGCTTCATCTTCTACGTCATTAAACCACTCTCTTTCTACCTCTTATGCTGCTATAATTGGAAACTCAAGATACTTAAGGCCGGTACAATCTCTTCTTGAAGAACTTGTTGATGTCGGTGGAAATGTGGTAGACAGAATCAATGAGAAGTATGTGGAGAAGCTATTTCGTGGGAGTAAAACTGCCCGAAGACTTTCCTCAGAGTTAAGAGCGGAGTTATGCAATAAGGGGGTTTTATTGGCTGAGAAACGCGAACTTCAAGTGAAAATTGCAAAGCTGATTGCTTTGTTAAATGAGGTAGAGAGTAGATATGAGAAATACTACCATCAAATGGAAGAAGTGGTGTCGTCCTTTGAAATGATAGCTGGTCTAGGAGCTGCCAAATGTTATACTGCTTTAGCACTTCAAGCCATGTCTCGGCATTTCTGCAGCTTGAGGGATGCCATAGTGTCACAAATCAATAAGGAGAAAAGGAAACTCTTTCAAGATTTACCTAAAATCAGCAGTGAATTATCTCAACTAAGCTTGTTTGATAGAGATAGGAGACAAAATAGAATGTCTCTCCAACAGCTTGGGATGATTCAAAGCCAACGGCAAGTGTGGAGACCCATCAGAGGGTTGCCTGAAACTTCTGTAGCAATCCTTCGTTCTTGGCTTTTCGAACACTTCCTCCACCCTTATCCTAATGATTCTGAAAAGCTTATGCTGGCATCCCAGATAGGTTTGACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTCGTGTACGGCTATGGAAACCAATGATAGAAGAGATGTACAAAGAAGAGTTTGGTGATTCCTCAGAAGACTCCAATCCCCCTGATAACAATTACTTGGCGAGGGAAGACACCACAGAACGCGTGGAGGATTAA 1275 0.4267 MSNQFENQTFDAYGSSLRSSNAFPEALAVFPSIQAPVLAEGSEISHTRHLMDLLGAPTESNNQQPQPQGLSLSLGSHMLVHSEDYRQPSLNPGLVSPNYFMSGEESREPCNPGVDHLTSDYSFTNTSFASSSTSLNHSLSTSYAAIIGNSRYLRPVQSLLEELVDVGGNVVDRINEKYVEKLFRGSKTARRLSSELRAELCNKGVLLAEKRELQVKIAKLIALLNEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIVSQINKEKRKLFQDLPKISSELSQLSLFDRDRRQNRMSLQQLGMIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQIGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPPDNNYLAREDTTERVED 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2744 424 SMART HOX_1 328 392 IPR001356 GO:0003677
Dere05g2744 424 SMART prehox3 141 278 IPR006563 -
Dere05g2744 424 CDD homeodomain 328 389 IPR001356 GO:0003677
Dere05g2744 424 Coils Coil 210 230 - -
Dere05g2744 424 Pfam Associated with HOX 147 277 IPR006563 -
Dere05g2744 424 Pfam Homeobox KN domain 345 384 IPR008422 GO:0003677|GO:0006355
Dere05g2744 424 ProSiteProfiles 'Homeobox' domain profile. 347 388 IPR001356 GO:0003677
Dere05g2744 424 MobiDBLite consensus disorder prediction 397 424 - -
Dere05g2744 424 SUPERFAMILY Homeodomain-like 334 396 IPR009057 -
Dere05g2744 424 Gene3D - 322 403 - -
Dere05g2744 424 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2744 Dere-ChrDere05 38169551 38171082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2744 68 403 Homeobox Transcription Factor Family AT1G19700 45.506 3.76e-86 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere05g2744 POX 6.9e-40 No_clan