Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2711 ATGCATCTGCTGAACAAGAGGCACCTAATAAAGCAGTTTTGCTCCAACACATGCACTGATCATCCTTCTCTTTCAACATTTCTAACTTATATCATTGTCCCTAAAGAAGACCTCTCACTGAACCCTTGCTGTTTCCGGACGCAGATTCCAAACTTTTCGTCAGCCAACAGCAGTAGGAAAATTGTATCTTACGTGCGCAAGTTGGTGAGTGGACCATGTGGTACAATCACGATAACTGATCTATCTGTCAGCTATCTTAGCAAACTTATCGATAAGGATCTCTCTCTCTCTCTCTCTCTCTCTATCTCTGTTGTTTCTTTGAACCAAAAGTGGGCATTTGTCTCACGTGCTAGTCCAATCATAATGCCATTCAGAAATATTGTTCGTGAGCTAAGGGAAATTCGAGATGGTATGGGGTACAAATCTAAAAGAGGGGTGAAGGCCAAGCTTATCCATTGCCGTGGAAAATCTCTTATTGCACCTGAATTGTCCTCACCAGCCTCGTCATCGTCGTCGGCTTCGTTAGTGACTCAGCAGAGCAGCTGGGCTAACTTACCCCCTGAGTTGCTATTAGACATAATCCAAAGGGTGGAAGCAAGTGAAACTTCCTGGCCTGCCCGGAGGGTGGTCGTAGCTTGTGCCTCAGTTTGTAGGTCATGGAGGAAGGTAACAGAGGAGGTTGTCAAGACACCAGAACAGTGTGGGTGGCTTACCTTTCCCATATCACTGAAGCAGCCTGGTCCAAGAGAGTCTCCAATACAGTGTTTTATAAAGAGAGAAAGGGTGACTTCGACATATCATTTATATCTTGGTTTGAGCCCAGCTCTCTCAGGGGATATGAGTAAACTGCTTCTGGCAGCAAAGAAGATTAGAAGGACAACATGTACAGAATTTTTGATATCCTTGGTAGCAGATGATTTCTCTAAAGCAAGCAATACTTACGTTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTCATGATCTTGGATAGTCAGCTCCCACTTGATTCTTCCCTTCCATTGAATAGCACATTGCAGCAAAGAATCTATTCGAAGCAGGTTCTTGCAAGGGCTGGTGCTGCAAACTATAATGTGGCCACCATATCGTATGAGCTCAATGTTCTTCGCACAAGAGGTCCTAGGAGAATGCGGTGTACTATGCATTCAATTCCCGTATCTGCCATCCAAGAAGGGGGCACTGCTCCTACTCCTTTGAGGTTTAATAATTGTCCTGATGACCTTTTATCTACCTCACTCATTTCAAAAGGAAGAAAGCCAGAAGCTGAGCATGGCTCAAGTAGCATGGACAATCCCCCCGAATCAAACCACAATGCAAGGGAACCACTGATTATGAAAAATAAAGCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGACGTGTTACAGTGGCTTCTGTGAAGAACTTCCAGCTCGTAGCAGCTGCAGAACCTCACCAAAATGTTTCAGTGGCTGAACAAGATAGAGTGATACTACAATTTGGGAAAATCGGGAAGGACATATTCACCATGGATTACCGTTATCCCCTTTCTGCGTTTCAAGCCTTTGCAATCTGTTTGAGCAGCTTCGACACTAAACCAGCTTGCGAGTGA 1629 0.4457 MHLLNKRHLIKQFCSNTCTDHPSLSTFLTYIIVPKEDLSLNPCCFRTQIPNFSSANSSRKIVSYVRKLVSGPCGTITITDLSVSYLSKLIDKDLSLSLSLSISVVSLNQKWAFVSRASPIIMPFRNIVRELREIRDGMGYKSKRGVKAKLIHCRGKSLIAPELSSPASSSSSASLVTQQSSWANLPPELLLDIIQRVEASETSWPARRVVVACASVCRSWRKVTEEVVKTPEQCGWLTFPISLKQPGPRESPIQCFIKRERVTSTYHLYLGLSPALSGDMSKLLLAAKKIRRTTCTEFLISLVADDFSKASNTYVGKLRSNFLGTKFMILDSQLPLDSSLPLNSTLQQRIYSKQVLARAGAANYNVATISYELNVLRTRGPRRMRCTMHSIPVSAIQEGGTAPTPLRFNNCPDDLLSTSLISKGRKPEAEHGSSSMDNPPESNHNAREPLIMKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPHQNVSVAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2711 542 ProSitePatterns Tub family signature 1. 470 483 IPR018066 -
Dere05g2711 542 Pfam Tub family 243 537 IPR000007 -
Dere05g2711 542 MobiDBLite consensus disorder prediction 424 446 - -
Dere05g2711 542 SUPERFAMILY Tubby C-terminal domain-like 231 542 IPR025659 -
Dere05g2711 542 ProSitePatterns Tub family signature 2. 527 542 IPR018066 -
Dere05g2711 542 Gene3D Tubby Protein; Chain A 240 542 IPR025659 -
Dere05g2711 542 SUPERFAMILY F-box domain 178 245 IPR036047 GO:0005515
Dere05g2711 542 PANTHER TUBBY-RELATED 167 540 - -
Dere05g2711 542 CDD F-box_AtTLP-like 182 226 - -
Dere05g2711 542 PRINTS Tubby superfamily signature 298 314 IPR000007 -
Dere05g2711 542 PRINTS Tubby superfamily signature 452 469 IPR000007 -
Dere05g2711 542 PRINTS Tubby superfamily signature 470 486 IPR000007 -
Dere05g2711 542 PRINTS Tubby superfamily signature 363 390 IPR000007 -
Dere05g2711 542 PRINTS Tubby superfamily signature 499 518 IPR000007 -
Dere05g2711 542 PRINTS Tubby superfamily signature 314 338 IPR000007 -
Dere05g2711 542 PRINTS Tubby superfamily signature 520 542 IPR000007 -
Dere05g2711 542 Pfam F-box domain 182 227 IPR001810 GO:0005515
Dere05g2711 542 Gene3D - 176 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2711 Dere-ChrDere05 37880843 37886277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2711 147 542 TUB Transcription Factor Family AT1G47270 62.344 2.81e-166 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere05g2711 Tub 3e-103 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2711 05 37880843 37886277 Dere05g2711 05 37880843 37886277 ECH