Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2708 ATGGGGTGGAGGAGTGTACTCTGCGGGCATACGACCAAGAAACTATCTAGGCTTAATGGAACTTCACTATCTCCTTACTCGAATTTCTGTAAAATTAGTTCCACTGTCATACTTCCTACATGTCCTTCAACTCATTCTTCTGATCACAGTTATTGCTTCACTAACTTCCAATCACGTCAATGCCGAAACTCCATTTCCCCCTTCTCTAGGCATTATCATTCTACTAGACTAAATAGACTCAGCAATTTGGTCTATGACCCGAAAGCTATTTCGGAGGGGGAGGAGGAGGATGGGACGATGAACGAGTTCTTGTCACGATTTGTCTGGTTTATGCGTAAGAAGATCGTCGAAGCATATCCGACTTCTGATAAACAAACAATTGATGGCATGCTACTGATCATCGTGAGCAAGGTTGTATCTGAATTGGAAAAGGGTGGGCTTGAGCAGGTAATTAATGCGCCGGTCGGTCCTTCACCAGATTTTAGTGAGGATTTGTGGAAGACGGTATGGGAGGTGAGCAATATGGTATTGGATGATATGAGTAAGGAACGGAAGAAGGAAAAAATGAAGGGTTTTTTGCACTATGAAGAAGTGAAGGAGATGTGCAGGTTTGCCGGCGAAGTTGGTGTTCGTGGGGATTTGCTCAGAGAGCTTAGATTCAAGTGGGCGCGCGAGAAAATGGAGGAACATGAGTTCTACGAGAGTTTGGAACGCCTGAGGAAAGAGGCGCAAGCTGAAGAAAAAGCAAAATCAGAGAGCCAGAAGGTTGATGCTGTTGAGGAGAAATCTAAGACTGTTACACTTCCCAAGAGACGAGGAAAGATAAATTATAAGATATATGGGCTAAATCTCTCTGATCCTAAGTGGGCAGAAGTTGCTGACAGAATCCATGAGACAGGGGAACTCATTTGGCCGCAGGAGCCAAAACCCATATCTGGGAAATGCAAACTTGTCACTGAGAAAATTCTGTCATTAAATGAGAGGGATGACCCGTCTACGCTGATAGCTGAGTGGGTAGAGCTTCTCCAACCTAGCAGGGTAGACTGGATTAGTTTTCTTGACAAATTGAAGGAGCGGAATACTCCTTTGTACTTAAAGGTAGCAGAAATTGCATTGACAGAAAAGTCTTTCCAAACAAATATCCGTGACTATTCTAAGCTTATTAGTATCTATGCTGGAGAGAATAAGGTTGGTGATGCTGAGAGGATTCTGAAGAAGATGAATGAAAATGGTTATCTCCCAGATGCTATAATAGCCAGTGCATTGGTTGACATGTACGCAAGGGCAAGCAATTTTGATCGTGCAAAAGAAGCATTTGAAGGCTTGAGAAGCCAGGGTGTCCAACCAGACATAAAAATCTATAACTCAATGATCATGGCATATGTAAATGCTGGCCAACCTAAGATGGGTGAGGCTCTAATGAGGGAACTGGAGACAGGAGACATCAAACCCACTTACGACATATACATTGCATTGCTCCGGTCTTTTGCTCAACTTGGTGATGTTAGTGGAGCTGTACGAATTTCAACATCAATGCAGTTTGCAGGGTTTGAGCCGACAATGGAGACTTGTACATTGCTTGTTGAGGCATATGGGCAGGCAGACAACCCTGATATGGCGAGAAACAGCTTTGACTACATGATCAAACTTGGATATAAGCCTGACGATAGGGTCACTGCTAGCATGATTGCAGCTTACGAGAAGAAAAATTTATTGGATAAAGCATTGAATCTTCTTTTAAAGTTAGAGAAGGATGGGTTTGAGCCTGGGATTGCCACTTACACTGTTCTTGTGGACTGGTTAGCAAAGATGCAGCTTGTTGATGAGGCTGAGCAGCTTTTAGGGAAAATTGCTCAGCAGGGTGAGGCTCCTCCTCTGAAGATTCAAGTGAGTCTTTGTGATATGTATGCAAGGGCTGGAGTTGATAAAAAAGCCCTTCAGGCTCTGGGAGTTCTTGAGGCTAGGAAGGAACAATTAAGACCAGATGAATTTGAGAGAATCATAAGAAGTCTTGTTTCTGGTGGATTTGTGCAGGATGCCCGAAGAATACGAGGGATAATGGAGGCTCAGGGTTTTACTCCATCAGAGCCACTTGAAATGGCCCTTAGTGGGACTGATACGGTTCGTGGCAGAAGACCAAGTATGAGATCCCTTTCTGGTCTCCCTGCCAGGTGA 2175 0.44 MGWRSVLCGHTTKKLSRLNGTSLSPYSNFCKISSTVILPTCPSTHSSDHSYCFTNFQSRQCRNSISPFSRHYHSTRLNRLSNLVYDPKAISEGEEEDGTMNEFLSRFVWFMRKKIVEAYPTSDKQTIDGMLLIIVSKVVSELEKGGLEQVINAPVGPSPDFSEDLWKTVWEVSNMVLDDMSKERKKEKMKGFLHYEEVKEMCRFAGEVGVRGDLLRELRFKWAREKMEEHEFYESLERLRKEAQAEEKAKSESQKVDAVEEKSKTVTLPKRRGKINYKIYGLNLSDPKWAEVADRIHETGELIWPQEPKPISGKCKLVTEKILSLNERDDPSTLIAEWVELLQPSRVDWISFLDKLKERNTPLYLKVAEIALTEKSFQTNIRDYSKLISIYAGENKVGDAERILKKMNENGYLPDAIIASALVDMYARASNFDRAKEAFEGLRSQGVQPDIKIYNSMIMAYVNAGQPKMGEALMRELETGDIKPTYDIYIALLRSFAQLGDVSGAVRISTSMQFAGFEPTMETCTLLVEAYGQADNPDMARNSFDYMIKLGYKPDDRVTASMIAAYEKKNLLDKALNLLLKLEKDGFEPGIATYTVLVDWLAKMQLVDEAEQLLGKIAQQGEAPPLKIQVSLCDMYARAGVDKKALQALGVLEARKEQLRPDEFERIIRSLVSGGFVQDARRIRGIMEAQGFTPSEPLEMALSGTDTVRGRRPSMRSLSGLPAR 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2708 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Dere05g2708 724 Coils Coil 233 262 - -
Dere05g2708 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Dere05g2708 724 Pfam Pentacotripeptide-repeat region of PRORP 395 501 IPR033443 -
Dere05g2708 724 Gene3D Tetratricopeptide repeat domain 366 503 IPR011990 GO:0005515
Dere05g2708 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 590 624 IPR002885 -
Dere05g2708 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Dere05g2708 724 MobiDBLite consensus disorder prediction 704 724 - -
Dere05g2708 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Dere05g2708 724 Pfam PPR repeat 523 551 IPR002885 -
Dere05g2708 724 Pfam PPR repeat 561 587 IPR002885 -
Dere05g2708 724 Pfam PPR repeat 593 618 IPR002885 -
Dere05g2708 724 Gene3D Tetratricopeptide repeat domain 504 673 IPR011990 GO:0005515
Dere05g2708 724 NCBIfam pentatricopeptide repeat 420 451 IPR002885 -
Dere05g2708 724 NCBIfam pentatricopeptide repeat 453 485 IPR002885 -
Dere05g2708 724 NCBIfam pentatricopeptide repeat 384 416 IPR002885 -
Dere05g2708 724 PANTHER OS07G0661900 PROTEIN 110 702 - -
Dere05g2708 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2708 347 695 Glycosyltransferase AT1G05670 24.642 8.68e-33 133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2708 05 37870635 37873861 Dere05g2708 05 37870635 37873861 ECH