Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2661 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTACTCCAGCAACAATAGTAACAGCGATGCAGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCGCAAGACCCTATCATTACTATTTGTGGTCATCTTTTCTGTTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGCCCAGTGTGCAAGGCCCTCGTTGAGGAGGAGAAATTGGTCCCCTTATATGGGAGAGGGAAGACATCAACTGACCCAAGGTCGAGGTCTGTTCCTGGTATCAATATACCACATCGTCCAGCTGGTCAGAGACTCGAAACTGCTCCCCCACCTGAGTCAAACCACTTTCCTCAACATGGGTTTGGATTCATGGGTGGGATGGGAGGTTTTACTCCAATGGCAGCAACAAGATTTGGGAATTTTAGATTGTCCACAGCATTTGGTGGTTTCTTTCCATCGTTATTTAACTTTCAGTTGCATGGATTCCATGATGGAACCATGTATGGTAGTCCAACTGGTTTTCATTATGGATTTCCTAATTCATTTCATGGTGGCCACGCTCATGGATATTATCCTCAGTACAGAGGTCAAGGTCAACAAGATTATTATCTAAGGAGGCTACTTATGGTTGTTGTATTATGTGTTGTTTTTGCTTTTATTTGGCAATAG 693 0.4401 MASGFGESTSRSPPSPSYSSNNSNSDAGNFECNICFDLAQDPIITICGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSRSVPGINIPHRPAGQRLETAPPPESNHFPQHGFGFMGGMGGFTPMAATRFGNFRLSTAFGGFFPSLFNFQLHGFHDGTMYGSPTGFHYGFPNSFHGGHAHGYYPQYRGQGQQDYYLRRLLMVVVLCVVFAFIWQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2661 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 86 IPR013083 -
Dere05g2661 230 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Dere05g2661 230 SUPERFAMILY RING/U-box 29 85 - -
Dere05g2661 230 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Dere05g2661 230 MobiDBLite consensus disorder prediction 86 119 - -
Dere05g2661 230 SMART ring_2 32 72 IPR001841 -
Dere05g2661 230 MobiDBLite consensus disorder prediction 1 22 - -
Dere05g2661 230 CDD RING-HC_AtRMA-like 30 74 - -
Dere05g2661 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 224 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dere05g2661 230 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Dere05g2661 230 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2661 Dere-ChrDere05 37430656 37431348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2661 30 213 C3H Transcription Factor Family AT1G19310 62.963 1.64e-82 244