Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2656 ATGAATCGCAACGCAATCGGATCTGATTTTTTCCTAAATTACTCTCAAGCACAAAGTGCTTTACCTCCAATCACTTGCTTAGCTGGACATGTATGTCTGGATATTATTAGAGGAAAGATCCTTCTAACTCGTGATCTTGTTAAGCGAAGAGAGCAGCAACAGTCTCCTTGTTTAACAGATGTGGAGCCAGATAAACTAAGTTGCTTACCAGGTCATGTTATAGATCAAATTCTGTCACATTTGTCAGTCCGGGAAGCAGTGAGGACAAGTGTTTTATGTAGCAAGTGGAGGTACAAATGGACCACACTACCGAATCTTGTGTTTGATAACCAGTGTCTGTCTTTGACTTCCCAAGATCATTCAGTTATCAAGAACAAGCTTGTTGGAATTATTGATCATGTGCTTTTGCTTCACTCTGGTGCAATCAACAAGTTCAAGCTCTCCCATCGCGATCTCATTGGTGTGACTGACATTGATCGCTGGACTCTTCATCTGACCAGAAGGTCTGTCAAAGAGCTTGTGCTGGAAATCTGGAAAGGGCATCGCTACAAGATACCCTCCTGTTTATTTCATTGCCAAAGTTTAATTCATTTGGAATTATTTAATTGTTGGCTTAAGCCTCCATCAACATTTAAAGGCTTCAAGAGCTTGAAGAGTCTTGATCTTCAACATGTTACCATGGATCAAGATGTGTTTGAAAACTTGTTATCTAGCTGCCCACTACTTGAACGTCTAACATTGATGAACTTTGATGGTTTCACTCATCTCAACATTGATGCGCCAAATCTTCAGTTTTTTGACATTGGAGGCAAATTTGTGGATGTTAGCTTTGAGAACACTTTCCATTTAGCTGTTGTGTCCATTGGTTTGTATTTGAACTTCGAACACGAGAAAAGTAGATGGCATGGAAGTTCTAGCAATTTGCTCAAGTTTTTTGTTCATCTACCTCATGTAAGAAGGCTAGAGGTCCAAAGCTATTTTTTGAAGTATCTGGCGGTAGGGGTTGTGCCACTAAAGCTTCCTAGACCATGCGTTGATCTAAGTTTTCTTTCCATACGCATAAGCTTCAATGATTCGAAGGAAATTTCAGCTGCTTTGTGCCTTTTAAGAAGTTCTCCTAATCTGCAAGAACTGGAAGTACTGGCTCGCAGTGACGAACAACAGAGTACTCTGGGAACACAAGCTTACTGTTGGGAGGATGAGTATTGGAATTGTCCAGTGATGCAGCTGCGATTTGTTAGGATAGACGGCATATCTGGTATCAAACCTGAATTAGATTTTATCAGCTTTCTACTTTCATATTCCCCGGTTCTAGAAAGGATGACTGTGAAGCCTGGTTCTTCAGATGGAGAATTAGAATTAATGAAAGAACTATTGCGGTTCAGGAGAGCCTCGGGACGTGCTGAAATTGTATACTTTGATCCGTGA 1428 0.4069 MNRNAIGSDFFLNYSQAQSALPPITCLAGHVCLDIIRGKILLTRDLVKRREQQQSPCLTDVEPDKLSCLPGHVIDQILSHLSVREAVRTSVLCSKWRYKWTTLPNLVFDNQCLSLTSQDHSVIKNKLVGIIDHVLLLHSGAINKFKLSHRDLIGVTDIDRWTLHLTRRSVKELVLEIWKGHRYKIPSCLFHCQSLIHLELFNCWLKPPSTFKGFKSLKSLDLQHVTMDQDVFENLLSSCPLLERLTLMNFDGFTHLNIDAPNLQFFDIGGKFVDVSFENTFHLAVVSIGLYLNFEHEKSRWHGSSSNLLKFFVHLPHVRRLEVQSYFLKYLAVGVVPLKLPRPCVDLSFLSIRISFNDSKEISAALCLLRSSPNLQELEVLARSDEQQSTLGTQAYCWEDEYWNCPVMQLRFVRIDGISGIKPELDFISFLLSYSPVLERMTVKPGSSDGELELMKELLRFRRASGRAEIVYFDP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2656 475 Gene3D Ribonuclease Inhibitor 158 287 IPR032675 -
Dere05g2656 475 Gene3D - 52 152 - -
Dere05g2656 475 ProSiteProfiles F-box domain profile. 63 97 IPR001810 GO:0005515
Dere05g2656 475 Pfam Leucine Rich Repeat 216 240 IPR013101 -
Dere05g2656 475 SUPERFAMILY RNI-like 163 379 - -
Dere05g2656 475 SMART 9598neu4hmm 404 473 IPR006566 -
Dere05g2656 475 SUPERFAMILY F-box domain 63 119 IPR036047 GO:0005515
Dere05g2656 475 PANTHER F-BOX PROTEIN-LIKE 64 446 - -
Dere05g2656 475 Pfam F-box domain 66 99 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2656 Dere-ChrDere05 37385447 37389021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2656 52 264 EF-hand Containing Proteins AT5G41840 24.255 4.96e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2656 05 37385447 37389021 Dere05g2656 05 37385447 37389021 ECH