Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2646 ATGATTTCTTCCAATTCCATGTTCACAAAACACCCACTTCTCATCCTTTTAGCCGTACATCTCCTTCCCTTAATCACCGCCCAAATAAACCACCGCGACTGCCACCAGACATGCTCTTCACACCACTCTCTCCAAAGCTTTCCTTACCCTTTTGGGTTTTCTGCCGGCTGCGCAATCCGCCTCAACTGCACCTCCGCCGGCGGAATCTTCATTGGAGAATTCCCAGTCCAGTCTGTTAACTCGGATAGCGTAATCGTCAGCGTCAAATCTCAATGCAATCGTCCATTGGATAGCTTCCACCGACTCTTCACCCACAAATACGCACCCAACTCGCGAAACGCTCTTCTTTTGCAAAATTGCAGCGAATCGGTCTCGCCCTGCGTCTTACCGGAGACCATGGTGCAGACTCAATTTTTGTCGGAAAACTGCAGCTCCGGCAGCGGCCAATTGAGTTGCTATTACGAAAACACCACCGCAGGGTTCATGAGCTTCCAGAATTTAACGAAGAGCCACTGTAAGTACCTCATGTCGTCCATAGCGGCAGAGGATTTAAGGAACATTTCAGGTACGAGTACAACCACGGCGGTGTCGTTGGAGGTTGAGACGATTGAGCTCGGATGGTGGCTTGAAGGAGACTGCCGATGTTCTAAGGATGCCAATTGTACGATACTGGAATCGCCGATTGATAAGAAGCCCGGGTACCGATGCCGTTGCAAGGAAGGATACATCGGCGATGGGTTTTCGGCCGGCAATGGTTGCCGGAAAGCCTCTTCAGCATGCAACCCAGCAAAGTACATGTCTGGCCAATGTGGAGGGACAACCAGATTTGTTGTCTTAATTGGAGGAATTGTCTTTGGAGCTTCATTAATGATTGGCTTGGGTCTAATATGTTGCTTCTTTCGGCGGCGCTCCAAATTGAGAGTCACAAAGAGCACAAAAAGGCGCTTAACTGAAGCTACCAGCAGTTACAGCGTTCCTATCTATGGCTACAAAGACATTGAGAGAGCCACAAATAGCTTCTCAGAGAAACAGAGGCTTGGAACTGGGGCATATGGGACAGTTTACGCGGGAAAACTTCACAATGACGAATGGGTTGCCATCAAAAGGATCAAATATAAAGATACTGATAGTATTGAGAAAGTAATGAACGAGATCAGGCTCATCTCCTCTGTCAGTCATCCTAATCTAGTCCGCTTGTTGGGTTGTTCTATCGAATATGGAGAACAAATTCTTGTCTACGAGTTCATGCCTAATGGAACGTTAAGTCAACATTTGCAAAGGGAGAGAGGTAATGGACTTTCATGGCCGGTTCGACTCACTATTGCCGCTGAAACAGCACAAGCCATAGCACATCTCCACTCTGCCATTAATCCTCCAATTTACCATAGAGACATCAAGTCAAGCAACATACTGTTGGACAACAACCTTAGATCCAAAGTTGCAGATTTTGGTCTTTCTAGACTTGGGATGACGGAAATATCCCACATTTCGACTGCCCCACAAGGAACCCCTGGATACGTTGATCCACAATACCATCAAGACTTCCATCTTTCTGATAAAAGTGATGTATATAGCTTCGGTGTTGTTCTGGTTGAGATCATTACAGGATTGAAAGTGGTGGACTTTACTCGTCCGCAGAATGCAGTAAATTTGGCTTCTTTTGCTACGGACAGTATTGGGAAGGGGCTTTTGGATGAGATTATAGACCCTTTCCTTGAAGCAAATATGGATGATTGGACTCTTTCCTCTATACACAAGGTAGCTGAGCTAGCTTTTCGATGTCTTGCATTCCACAGGGACATGAGGCCTTCAATGACAGAAGTGACTGCTGAGCTAGAGCAGATCAGGCTAAGCAGGTGGGCATCTTTTGAAAACAGCAATCGTACAGCCTCAACAGAGTTGTCCTCTTCCTCTTCTTTCTCTAATGAAAGTGAGAAACCGCTAAGTGTGAAAGGAAAGATGGTGGGGCTAGAAGGTAAAGCCCTTCTCAGGTTGCAGACTGAGCCTGCTGCGTTAAACTCAATGGAAAGGCCGAAGAATAGTTCCCCGGTATCTGTACAAGACCCAGATTTTTGGCTGAGCGAACAGAGCTCTCCTTCATCAAATAGTTTGCTAAGTAAATCATTTGAGTGA 2133 0.4641 MISSNSMFTKHPLLILLAVHLLPLITAQINHRDCHQTCSSHHSLQSFPYPFGFSAGCAIRLNCTSAGGIFIGEFPVQSVNSDSVIVSVKSQCNRPLDSFHRLFTHKYAPNSRNALLLQNCSESVSPCVLPETMVQTQFLSENCSSGSGQLSCYYENTTAGFMSFQNLTKSHCKYLMSSIAAEDLRNISGTSTTTAVSLEVETIELGWWLEGDCRCSKDANCTILESPIDKKPGYRCRCKEGYIGDGFSAGNGCRKASSACNPAKYMSGQCGGTTRFVVLIGGIVFGASLMIGLGLICCFFRRRSKLRVTKSTKRRLTEATSSYSVPIYGYKDIERATNSFSEKQRLGTGAYGTVYAGKLHNDEWVAIKRIKYKDTDSIEKVMNEIRLISSVSHPNLVRLLGCSIEYGEQILVYEFMPNGTLSQHLQRERGNGLSWPVRLTIAAETAQAIAHLHSAINPPIYHRDIKSSNILLDNNLRSKVADFGLSRLGMTEISHISTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLVEIITGLKVVDFTRPQNAVNLASFATDSIGKGLLDEIIDPFLEANMDDWTLSSIHKVAELAFRCLAFHRDMRPSMTEVTAELEQIRLSRWASFENSNRTASTELSSSSSFSNESEKPLSVKGKMVGLEGKALLRLQTEPAALNSMERPKNSSPVSVQDPDFWLSEQSSPSSNSLLSKSFE 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2646 710 SMART serkin_6 340 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2646 710 FunFam Wall-associated receptor kinase-like 20 416 625 - -
Dere05g2646 710 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Dere05g2646 710 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 688 IPR044652 GO:0004672
Dere05g2646 710 Gene3D Laminin 213 248 - -
Dere05g2646 710 Gene3D Transferase(Phosphotransferase) domain 1 416 638 - -
Dere05g2646 710 Pfam Protein kinase domain 340 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2646 710 MobiDBLite consensus disorder prediction 673 710 - -
Dere05g2646 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Dere05g2646 710 SUPERFAMILY Protein kinase-like (PK-like) 316 613 IPR011009 -
Dere05g2646 710 ProSiteProfiles Protein kinase domain profile. 340 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2646 710 MobiDBLite consensus disorder prediction 668 710 - -
Dere05g2646 710 Gene3D Phosphorylase Kinase; domain 1 301 415 - -
Dere05g2646 710 FunFam Wall-associated receptor kinase-like 14 307 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2646 Dere-ChrDere05 37296987 37301021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2646 46 705 Receptor kinase-like Gene Family AT2G23450 52.537 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Dere05g2646 Pkinase 1.5e-42 CL0016