Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2635 ATGGGGATGATTTGCTTCAAGTATCAACTCCTATCCTTGCGTGATCTCTGTCTGCTGGTTATAGTTGAAATGGAAGAAACTTGCGAAAGCTGTAGATCTAGATCATGGGTAGACGACATTTACTGGACCCGTTTCCAATTCATCCATTTTGCCCAGCTTCTCCCTACTGGTTTTGATCAACAGCTTGCACTTCCCAAAAGTTTTTCAGCTAATTTGAGAAAGAAATTGCCAGATTATGTGACTCTCAGAGGTCCTGGTGGCTCTCTGTGGAGTATTGGGTTGACTACCATCAATGATACCTTGCACTTCACGCACGGTTGGCAACAATTTGTCAAAGATCACTGTTTGCAAGAGAATGATCTGCTGGTGTTCAAGTACAACAATGAATCAGAGTTTGATGTTTTAATATTTGACGGAGAGAGCTTCTGTGAGAAGGCTGCTTCTTATTTTGTAAGGAAATGCGGGCATACAAATAAGAGAAACAGAGATAACTATGTGGAAGAAGTCAATATCCCTTCTAATATTGGCGTTGAATGTGCTTCACCTGAGAAATTCATGCATGGTGAGAGTCTCAGAGTGCCAGCAGTAGTCCCCTCGGAAACTAGTAGTAAAGAGACTTGCAATATTGGTTTGGATGCCTCACCTGTGACAGCTGTTGTAACAGACGCACAAACTATGCGGAGAGGAAGAACCAGAGGATCTAGTGGACGTGGGGGCAGAATTAACTGGGTTCCTGATGCTGAACCTTCACCAGCGGGCAAAAGTAGGACGAATGAAACATTATATATTTCAAACCGAAGGACTGTCACTGAAGACGAAAAAAAGAATACCCTCCAATTGGCTCGGGCAGCATGTACTGACGATGGTTTCTACATAGTCATGCGTCCCTCACATGTATACAAGAGATTCTATGCGTCAATCCCTAGCAAGTGGATAACAGAACATCTTTTTCCCCATTCTGAAGATGTGATATTACGCATGGGAGGGTTGGAATGGCCTGCCAAATACAGCTTTGAACATAACCGTCGCACTGGAGGACTTTCTGGTGGGTGGAAACATTTTGCTTTGGACAATAACCTGGAAGAATTTGATGTTTGTGTGTTTAAACTAGCAGGTCAAACCAAGCCATTGATCATGGATGTGAAAATATTCAGAGTTATTGAGGAGTTTACTCCTTTGGATAAAGTGAAATCTGGAGGAAGGCAGGGCAGAAAGGCCATCCAAGCTTAG 1230 0.4309 MGMICFKYQLLSLRDLCLLVIVEMEETCESCRSRSWVDDIYWTRFQFIHFAQLLPTGFDQQLALPKSFSANLRKKLPDYVTLRGPGGSLWSIGLTTINDTLHFTHGWQQFVKDHCLQENDLLVFKYNNESEFDVLIFDGESFCEKAASYFVRKCGHTNKRNRDNYVEEVNIPSNIGVECASPEKFMHGESLRVPAVVPSETSSKETCNIGLDASPVTAVVTDAQTMRRGRTRGSSGRGGRINWVPDAEPSPAGKSRTNETLYISNRRTVTEDEKKNTLQLARAACTDDGFYIVMRPSHVYKRFYASIPSKWITEHLFPHSEDVILRMGGLEWPAKYSFEHNRRTGGLSGGWKHFALDNNLEEFDVCVFKLAGQTKPLIMDVKIFRVIEEFTPLDKVKSGGRQGRKAIQA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2635 409 CDD B3_DNA 50 138 IPR003340 GO:0003677
Dere05g2635 409 ProSiteProfiles B3 DNA-binding domain profile. 290 387 IPR003340 GO:0003677
Dere05g2635 409 MobiDBLite consensus disorder prediction 227 256 - -
Dere05g2635 409 Pfam B3 DNA binding domain 290 385 IPR003340 GO:0003677
Dere05g2635 409 Pfam B3 DNA binding domain 59 138 IPR003340 GO:0003677
Dere05g2635 409 SUPERFAMILY DNA-binding pseudobarrel domain 50 138 IPR015300 -
Dere05g2635 409 SMART B3_2 290 387 IPR003340 GO:0003677
Dere05g2635 409 SMART B3_2 50 140 IPR003340 GO:0003677
Dere05g2635 409 SUPERFAMILY DNA-binding pseudobarrel domain 290 376 IPR015300 -
Dere05g2635 409 ProSiteProfiles B3 DNA-binding domain profile. 47 140 IPR003340 GO:0003677
Dere05g2635 409 Gene3D - 268 389 IPR015300 -
Dere05g2635 409 Gene3D - 44 143 IPR015300 -
Dere05g2635 409 CDD B3_DNA 290 385 IPR003340 GO:0003677
Dere05g2635 409 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 57 387 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2635 Dere-ChrDere05 37156208 37160919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2635 24 385 REM Transcription Factor Family AT4G33280 34.684 1.25e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere05g2635 B3 8.7e-14 CL0405