Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2634 ATGGCATGCCGGCACTGTGAGGAGAACTTAAATGTGAGGAGGCCTCACTTCTATGAGCTTTATTCCTCCTCATCGAGCTCCGAGAGATTGAAAATTCCTGCTGGATTTGTCAGTTGTTTGGAAGGCAGGACATCTGGATTAGTCTCACTGACAGGTCCTAGCGGAAATACTTGGCATGTTCAATTGATTAAGGAGGATGATGATCTATTCCTCCATCATGGATGGCCAACATTTTTGGAAGATCACATTATAGAAGGTGGTGATCTTTTGCTTTTCAGATATGAGGGTCACTTACATTTCACTGTGCTAGTCTTTGATCAAAGAGCATGTGAGAAAGAAGCAGCATTTAATTCTGCTTGCTGTCAAGATTCATGTGACCTTAATCATATTAAAGTACTAAAAAGAGACAGGGAGGAGAATTCTTCTTTGAATGTTCTCGCTGAAGGTTTGCTGAAGAAAATGAGAGGGAATGCCTTTGAGAGCCAGGAACATAAAGATTTACCGTTGCATGCATGGGTGAAACCAATTACCATGTTCAGAGAAAAAGGAGAATCCTCCAAAGAAGACGAGCAACTTAGATGCCCAACTAATGATGTTGCTGTGCCTTATCAAATGGAATATGGCAATGAATATGAAGAGGCTGCCATGCAGATTGGAAGTGGGAAAGAAGACGATCAATATGTGCATGGTAGAGCTTGTCTGTCAAAGTTATCGCCACATGATGAGAAAAGAGTAGCTCAACTGTTTACTTCCTCTTTCCCGTATTTTGTGAGAATCATGAAAAGCTTCAACATCAGTGGTTCGTATACTCTGAATATCCCATATCAATTTTCAATGGCACATCTTCCAAACTGTAAGATTAAGATCATCCTTCATAATATAAAAGGGGAACGTTGGACAGTTAATTCTGTGCCAACAACAAGAGTACATACAAGTCACACTCTCTGTGGTGGATGGATGGCTTTTGTTCGCGGCAATAACATTAAGATAGGAGATATCTGCATCTTTGAACTTGTGCATGAGTGTGAATTACGTGTCCGCATCGTTGGAGTTGGCAAAGATGGGACAGACTGCCAGGTTGGGCAACTAGCTTTTAGCAGGCCTCTTGCAGGACATTCCATCAATTCCCATAAAACTTCTCGATATATGCCAATCAAGCCCAAAGTCAATTCAAAATGCATGGGAAAAGTTGATCTGTCTGATAAAAAGTGGTCAAAGATGGGTCAAGATATTTTTTTGTCCATTGATAAAAAGAAACCTGGCGGAGCGTCCAAGACTTCTATGAAGACAGGAATTTGCTCTCAGTCAAAAGCTGCCCATAATCAGTTGGCTGTTCCGAGGCGACATCGAACTGAAGATGAACTATGCTCACAAGCTAAAGCTGGTTTGAGAATGCTGTTCGCACTAGATGAACAAAGAGCGGCTCAGGCTTTCACTTCCTCTTTTCCTAGTTTTGTAAAAATCATGAAGAAGTTCAATGTCAGCGGATCATACACTTTGAAAATCCCATATCAGTTCTCTGCAGCACATCTCCCATCCTACAAAACAGAGGTTGTGCTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTTCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGCGGGGGGTGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGAGACACGTGCATTTTCGAACTTGTTGCTCAGTGTGAGATGCAGGTTTATATATCTGGGATTGGTAAGGAAGGGCTTGACCATCAGAATAGGGAATCAAAATCAAGTAGGTTACCTGTAGTTCCATCTACCAGCAAACACTCTTGTTTGTGA 1830 0.418 MACRHCEENLNVRRPHFYELYSSSSSSERLKIPAGFVSCLEGRTSGLVSLTGPSGNTWHVQLIKEDDDLFLHHGWPTFLEDHIIEGGDLLLFRYEGHLHFTVLVFDQRACEKEAAFNSACCQDSCDLNHIKVLKRDREENSSLNVLAEGLLKKMRGNAFESQEHKDLPLHAWVKPITMFREKGESSKEDEQLRCPTNDVAVPYQMEYGNEYEEAAMQIGSGKEDDQYVHGRACLSKLSPHDEKRVAQLFTSSFPYFVRIMKSFNISGSYTLNIPYQFSMAHLPNCKIKIILHNIKGERWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKIGDICIFELVHECELRVRIVGVGKDGTDCQVGQLAFSRPLAGHSINSHKTSRYMPIKPKVNSKCMGKVDLSDKKWSKMGQDIFLSIDKKKPGGASKTSMKTGICSQSKAAHNQLAVPRRHRTEDELCSQAKAGLRMLFALDEQRAAQAFTSSFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPSYKTEVVLRNSRGECWTVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYISGIGKEGLDHQNRESKSSRLPVVPSTSKHSCL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2634 609 MobiDBLite consensus disorder prediction 594 609 - -
Dere05g2634 609 Gene3D - 9 110 IPR015300 -
Dere05g2634 609 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 21 356 IPR044837 -
Dere05g2634 609 CDD B3_DNA 29 106 IPR003340 GO:0003677
Dere05g2634 609 MobiDBLite consensus disorder prediction 586 609 - -
Dere05g2634 609 SUPERFAMILY DNA-binding pseudobarrel domain 478 579 IPR015300 -
Dere05g2634 609 SMART B3_2 17 108 IPR003340 GO:0003677
Dere05g2634 609 SMART B3_2 256 352 IPR003340 GO:0003677
Dere05g2634 609 SMART B3_2 485 583 IPR003340 GO:0003677
Dere05g2634 609 Gene3D - 239 351 IPR015300 -
Dere05g2634 609 Gene3D - 470 580 IPR015300 -
Dere05g2634 609 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Dere05g2634 609 ProSiteProfiles B3 DNA-binding domain profile. 485 581 IPR003340 GO:0003677
Dere05g2634 609 Pfam B3 DNA binding domain 22 107 IPR003340 GO:0003677
Dere05g2634 609 Pfam B3 DNA binding domain 485 573 IPR003340 GO:0003677
Dere05g2634 609 Pfam B3 DNA binding domain 260 348 IPR003340 GO:0003677
Dere05g2634 609 CDD B3_DNA 483 577 IPR003340 GO:0003677
Dere05g2634 609 ProSiteProfiles B3 DNA-binding domain profile. 256 352 IPR003340 GO:0003677
Dere05g2634 609 SUPERFAMILY DNA-binding pseudobarrel domain 249 350 IPR015300 -
Dere05g2634 609 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Dere05g2634 609 CDD B3_DNA 254 348 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2634 Dere-ChrDere05 37151909 37155956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2634 14 350 B3 DNA Binding Superfamily AT3G18990 24.932 2.00e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere05g2634 B3 3.6e-13 CL0405