Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2613 ATGCAATCGAACGGCTCTGTCGATTCCAAACAACCGGAGCAGAATCAACAGCAACAGAAAACGCCGACGCCGACGCCGCCGCAGGCGGTGCCAGTACCGCGGCAGTGGATGCCTATGCAGTATCCCGCGGCGGCTATGGTAATGCAGCATCACATGTTGCCACCTTCTCATTACGTGCCGCCGCCACCGCAGCCCTATATGGCTTACCACCAGTACCAGCAGCTGCAGCATCAGCATGTACCTCACCAGCCGCAGCAGCATCAGGGATCCGGCGGCGACAACAAGACGATCTGGCTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCATCGCTGCTTCGCTTCCACGGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGGCTGTCAGAGGGTTATGGATTTGTAGAATTCTATTCGCATGGCACAGCAGAGAAAGTCTTGCAGAATTATGCTAGCATTCTAATGCCCAATACAGAGCAACCTTTTCGCCTGAATTGGGCAACATTTAGCGCGGGAAACAAGCGTTCAGATAATGTTCCCGATCTTTCTATATTTGTAGGAGACTTAGCTGCTGATGTTACCGATAGCTTGTTGCATGAAACTTTTGCTAGAAAATACCCTTCCGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTAGCCGTTCAAAGGGTTATGGTTTCGTTAGGTTTGGAGATGACAATGAGAGGTCAAAGGCTTTGACTGAAATGAATGGTATCTATTGTTCTAGCAGGCCAATGCGTGTTGGTGCCGCAACTCCAAGAAAATCATCCGGCTATCAACAAGGAGCTCATATATCAAACGGCACATCCAGCCAATCTGAAGCAGATTCAGCAAACACAACTATATTTGTGGGAGGACTCGACCCTAATGTTACAGATGATGATCTTAGGCAGCCATTCTCCCAGTATGGTGACATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGCTTTGTGCAATTTGCAAACAGAAATAACGCTGAAGAAGCGTTGCAGAAGCTAAACGGGACAACGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGTGGATATTGGAAGCCCCTGGAATGGGGGGTATTATGGAAGCCCTGTTTATGATGGATATGGATATGTGTTGCCACCTCATCACGACCCTAGCATACATGCTGCTGCTGCGTATGGGGCATACCCTATTTATGGAGGCCATCAACAACAAGTAAGTTGA 1278 0.4781 MQSNGSVDSKQPEQNQQQQKTPTPTPPQAVPVPRQWMPMQYPAAAMVMQHHMLPPSHYVPPPPQPYMAYHQYQQLQHQHVPHQPQQHQGSGGDNKTIWLGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYASILMPNTEQPFRLNWATFSAGNKRSDNVPDLSIFVGDLAADVTDSLLHETFARKYPSVKAAKVVFDANTSRSKGYGFVRFGDDNERSKALTEMNGIYCSSRPMRVGAATPRKSSGYQQGAHISNGTSSQSEADSANTTIFVGGLDPNVTDDDLRQPFSQYGDIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRVDIGSPWNGGYYGSPVYDGYGYVLPPHHDPSIHAAAAYGAYPIYGGHQQQVS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2613 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 267 IPR000504 GO:0003723
Dere05g2613 425 CDD RRM3_NGR1_NAM8_like 293 364 - -
Dere05g2613 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 85 370 - -
Dere05g2613 425 CDD RRM2_SECp43_like 187 266 - -
Dere05g2613 425 CDD RRM1_SECp43_like 96 176 - -
Dere05g2613 425 MobiDBLite consensus disorder prediction 1 32 - -
Dere05g2613 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 366 IPR000504 GO:0003723
Dere05g2613 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 175 IPR000504 GO:0003723
Dere05g2613 425 Gene3D - 175 278 IPR012677 -
Dere05g2613 425 SMART rrm1_1 295 362 IPR000504 GO:0003723
Dere05g2613 425 SMART rrm1_1 189 263 IPR000504 GO:0003723
Dere05g2613 425 SMART rrm1_1 96 171 IPR000504 GO:0003723
Dere05g2613 425 FunFam Polyadenylate-binding protein RBP47B 94 174 - -
Dere05g2613 425 Gene3D - 279 395 IPR012677 -
Dere05g2613 425 FunFam Polyadenylate-binding protein RBP47 279 396 - -
Dere05g2613 425 MobiDBLite consensus disorder prediction 73 93 - -
Dere05g2613 425 FunFam Polyadenylate-binding protein RBP47B 176 278 - -
Dere05g2613 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 260 IPR000504 GO:0003723
Dere05g2613 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 359 IPR000504 GO:0003723
Dere05g2613 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 163 IPR000504 GO:0003723
Dere05g2613 425 SUPERFAMILY RNA-binding domain, RBD 170 283 IPR035979 GO:0003676
Dere05g2613 425 MobiDBLite consensus disorder prediction 1 23 - -
Dere05g2613 425 SUPERFAMILY RNA-binding domain, RBD 62 176 IPR035979 GO:0003676
Dere05g2613 425 MobiDBLite consensus disorder prediction 265 290 - -
Dere05g2613 425 SUPERFAMILY RNA-binding domain, RBD 279 394 IPR035979 GO:0003676
Dere05g2613 425 Gene3D - 94 174 IPR012677 -
Dere05g2613 425 MobiDBLite consensus disorder prediction 268 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2613 Dere-ChrDere05 37000989 37004052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2613 90 374 Eukaryotic Initiation Factors Gene Family AT4G34110 29.492 3.64e-28 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2613 05 37000989 37004052 Dere04g0238 04 2446989 2450882 CCT
Dere05g2613 05 37000989 37004052 Dere05g2613 05 37000989 37004052 ECH