Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2588 ATGCAGAGCTGCCGCTACCTCGCCACCCAATCGCTTGCATGGGTCCCAAGTGGCTCGTATCGGACAAACCGCCACCTCCTACCACCGACCCAACCCCTCAAGCTCCGATTTCCATCACCGATCTCCGCCGTGGCCGCACGGGCGCCCCCTGCGCCACTCAAAAGTCGAAAGACCCACTCAATGCCGCCGGAGAAGATGGAAGTTTTCAAGTCGCTGCAACGCTGGGCTTCGGAGGAGCTGCTGCCGCTGCTGAAGCCCGTGGAGCAGTGCTGGCAGCCACAGAACTTCGTACCCGACTCTTCGTTGCCGTTCGATGAATTCATGGATCAAGTGAAGGCGCTGCGGGATCGGACGGATGAGCTTCCAGATGAGTACTTCGTGGTTCTGGTGGGTGATATGATCACGGAGGATGCATTGCCTACGTATCAGAGCATGATAAACAACCTCGACGCCGTCGGGGACGAAACTGGATCAAGCCCGGATCCGTGGGCCGTGTGGACCCGCTCTTGGACTGCTGAGGAGAACAGGCATGGTGATCTGCTCAGAACCTATCTCTACTTATCGGGTCGGGTTGATATGCTCATGGTGGAGAAGACCGTACAGTATTTGATTGGAGCTGGCATGGATCCGGGAACAGAAAACAATCCATATTTGGGATTTGTTTACACGTCGTTTCAGGAGCGAGCCACCTTTGTATCTCACGGCAACACGGCTCGCTTGGCTAAGGAAGGGGGTGATCCGGTGTTGGCGCGCATATGTGGCACCATTGCAGCGGACGAGAAGCGTCACGAGAACGCCTACGCTAGAATAGTCGAGAAGCTTCTAGAAGTGGACCCCACGGGTGCAATGCTGGCCATTGCAGACATGATGCAGAAGAAAATAACTATGCCGGCTCACCTGATGCACGATGGGAGGGACCCACGTCTATTCGACCATTTCTCTGCCGTGGCGCAGCGACTTGGCGTATACACGGCCAACGATTACGCAGATATATTGGAGTTCTTGATCATACGGTGGAGATTGGAGAAGCTGGAGGGCTTGACAAGTGAGGGGCGGCGTGCACAGGATTTCGTGTGCGGACTAGCACCGAGGATTAGAAGGTTGCAAGAGCGAGCCGATGAGCGAGCGCGCAAGATGGAGCCGCATGGCGTGAAATTCAGCTGGATCTTCAACAAAGAGGTGGCCTTGACAATGTGA 1197 0.5572 MQSCRYLATQSLAWVPSGSYRTNRHLLPPTQPLKLRFPSPISAVAARAPPAPLKSRKTHSMPPEKMEVFKSLQRWASEELLPLLKPVEQCWQPQNFVPDSSLPFDEFMDQVKALRDRTDELPDEYFVVLVGDMITEDALPTYQSMINNLDAVGDETGSSPDPWAVWTRSWTAEENRHGDLLRTYLYLSGRVDMLMVEKTVQYLIGAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAKEGGDPVLARICGTIAADEKRHENAYARIVEKLLEVDPTGAMLAIADMMQKKITMPAHLMHDGRDPRLFDHFSAVAQRLGVYTANDYADILEFLIIRWRLEKLEGLTSEGRRAQDFVCGLAPRIRRLQERADERARKMEPHGVKFSWIFNKEVALTM 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2588 398 Pfam Fatty acid desaturase 64 390 IPR005067 GO:0006631|GO:0045300
Dere05g2588 398 ProSitePatterns Fatty acid desaturases family 2 signature. 314 333 IPR005803 GO:0006633|GO:0016491
Dere05g2588 398 Gene3D Ribonucleotide Reductase, subunit A 48 396 IPR012348 GO:0016491
Dere05g2588 398 PIRSF Dlt9_acylACP_des 34 396 IPR005067 GO:0006631|GO:0045300
Dere05g2588 398 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 49 394 IPR005067 GO:0006631|GO:0045300
Dere05g2588 398 FunFam Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic 48 396 - -
Dere05g2588 398 SUPERFAMILY Ferritin-like 52 394 IPR009078 -
Dere05g2588 398 CDD Acyl_ACP_Desat 64 372 IPR005067 GO:0006631|GO:0045300
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2588 Dere-ChrDere05 36468738 36470577 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2588 36 396 Acyl Lipid Metabolism Gene Families AT1G43800 78.453 0.0 598