Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2570 ATGTCGAAGACGTTGGTGCAGCCGATAGGGCAGAAAAGGCTGACGAACGTGGCGGTGGTGCGTCTGAAGAAGCATGGAATGCGCTTCGAGATCGCCTGCTATCCAAACACGGTTCTTTCTTGGCGTTCTGGCGTGGAGAAAGATCTGGATGAAGTATTGCAGTCGCATACTGTTTATTCAAATGTTTCAAAAGGAATTCTTGCAAAGTCAAAGGATTTGGTTGCTGCCTTTGGAACAGATTATCAGTCAAAAATATGTTTGGAGATTTTAAAGAAAGGAGAGCTTCAGGTTGCTGGGAAAGAGAGGGAATCTATTTTGTCGAATCAGTTCAGGGATATTGCAACCATTGTTATGCAAAAGACATACAATCCTGAGACTCAACGCCCTTACACAATCAATATGATTGAACGACTGATGCGAGAAATTCATTTTGCTGTTGACCCAAATAGCAGTTCAAAGAAGCAGGCTCTGGAAGTTATTCAAGAGCTTCAGAAGCACTTTCCGATTAAACGCTGTCCATTAAGAATACGAGTTGCTGCTCCAGAGGAAGAAGTACATTCTCTTCTAGATAAGCTAAATGTTTGGAAGGCAAGCATTATTTCTAAAGAAGGATCTGCTTGTCAGCTTTCTGTTATATTTGAATTGGAACCTGGTCTATATAAAGATTGTCACGACTTTGTTATGAACAACATGCATGGAAGATTTGAAGTTCTTGCACACACTCTTTATGTGGATGGGGACACCCAAGTGGAGCAATACAATGATCATGAGGATCTGTCTGCTCCTTTGCCCAAAGAAACTGGTGATTCTGTGCTTCAACTGAATGAAAAACTACAGAAGCAAACCATTTCTACCAAGAGTGGGCCCACTGAGGGACAACAAAAGCAAAACAAGTGCAGCACATGTAACGTTTCTTTTGAAAATCCTATGCTGTATAGGGAACACCATAAGAGTGAGTGGCACAAGCACAATATGAAGCGCAAGACCAGGCAACTCCCTCCCCTTACTGAGGAAGAGTGCATGGCAGACATGGAACTGGGTGATTCCAAATCTGATTTGAAGGATTATTCTTTTTGA 1077 0.4215 MSKTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGILAKSKDLVAAFGTDYQSKICLEILKKGELQVAGKERESILSNQFRDIATIVMQKTYNPETQRPYTINMIERLMREIHFAVDPNSSSKKQALEVIQELQKHFPIKRCPLRIRVAAPEEEVHSLLDKLNVWKASIISKEGSACQLSVIFELEPGLYKDCHDFVMNNMHGRFEVLAHTLYVDGDTQVEQYNDHEDLSAPLPKETGDSVLQLNEKLQKQTISTKSGPTEGQQKQNKCSTCNVSFENPMLYREHHKSEWHKHNMKRKTRQLPPLTEEECMADMELGDSKSDLKDYSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2570 358 Gene3D - 1 96 IPR036786 -
Dere05g2570 358 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Dere05g2570 358 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Dere05g2570 358 SUPERFAMILY beta-beta-alpha zinc fingers 286 344 IPR036236 -
Dere05g2570 358 NCBIfam ribosome assembly factor SBDS 13 228 IPR002140 GO:0042256
Dere05g2570 358 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Dere05g2570 358 FunFam SBDS, ribosome maturation factor 3 96 - -
Dere05g2570 358 FunFam SBDS, ribosome maturation factor 100 172 - -
Dere05g2570 358 Gene3D - 174 251 - -
Dere05g2570 358 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Dere05g2570 358 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Dere05g2570 358 Gene3D - 100 172 IPR037188 -
Dere05g2570 358 Gene3D Classic Zinc Finger 289 347 - -
Dere05g2570 358 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Dere05g2570 358 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 242 IPR039100 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2570 Dere-ChrDere05 36249933 36252731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2570 27 358 C2H2 Transcription Factor Family AT1G43860 57.101 8.95e-139 396