Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2569 ATGTCGTTAGTTAGATCTGCGGAGCTAGCCACTACACCATATAGAAATGCCAAGCTCTACTCAATCAAGGGAACTGATGTTAGGCCTGGCTCTCAAATTTTTGGTCAAGATAAGCACAGAACCATGTACATGACAGATTCTTACTCCAGTGAGAGTTATGAGAAGTACTTCCGTGATTCACCGGCAGAAGAACTGACAGAGCCATCTAGTTCCGGCATGTCTGGCAACTCATTGCCTGCAGGTGCCTCCTCTTATCCAGTTAGAGCTAGCTCAGGAGCCTCTGTGATTACTAACAACCCATTTGATACTTCTTTTGTGTCCTTGAGAAATCGTGATGCCTGTCAAGGCAACTTTGGATCAGATTTATTAGAAAGTGGAAGTCCTGATCCACTTGACTTTGATGGTCAAATGAGATTAAAACTACAAGAATTAGAGAGGGCACTGCTTGATGATAATGAAGATGATGAGGATGAAGAGGAAGAAGTATTTGGGACTGTTCAAAGCATGGAGATTGATGCTGAGTGGGCTGATCCCATTCAGAATATACTGCACCATGACTCACCAAAGGAGTCTTCATCCTCAGATTCTATTATTAGTAGCATCAGTAGTAACAAAGAGATATCACAGATCTCTCCTCGGACCCCCAGGCAATTGCTGTTGGAATGCGCTGGTGCACTTTCGGAAGGAAATATAGAAGAAGCATCATCTATGATAAATGAACTCCGACAGATGGTATCAATTCAGGGAGATCCTCCCCAGAGGATTGCAGCCTATATGGTGGAAGGACTTGCAGCTCGCATTGCTGAATCTGGCAGCAGTATTTATAAAGCGCTGAAATGCAAGGAACCTCCTTCTTCAGATCGTCTAGCAGCCATGCAGATACTGTTTGAGGTGTGCCCCTGTTTTAAATTTGGATTTATTGCTGCAAACGGTGCAATAACAGAGGCAGTTAAAGATGAAAAGAAGGTTCATATAATAGATTTTGACATCAATCAAGGAAACCAATACATAACTTTGATACAAGCACTTGCTTCAAGGCCAGGTAAGCCACCCCATGTGAGATTGACTGGGGTTGATGATCCTGAGTCTGTCCAGCGATCTGTTGGCGGCCTAAAGATCATTGGGCAAAGGCTTGTAAAACTTGCAGAAGTACTTGGATTGCCATTTGAATTCCAAGCGGTGGCTTCAAGGTCTTCCCTTGTCACTCCATCAATGCTCAGCTGTCGTCCCGGGGAAGCACTTGTGGTAAATTTTGCTTTTCAGCTTCATCACATGCCAGATGAGAGTGTTTCAACAGTAAATGAACGAGACCAACTTCTTCGCATGGTTAAGAGCCTGAATCCTAAACTTGTAACCGTAGTGGAACAAGATATGAACACTAATACCACTCCATTTTTCCCAAGATTTGTAGAAGCCTACAATTACTACTATGCTGTGTTTGAGTCCCTGGATGCTACTCTTCCTAGGGAGAGTCAGGACAGGATGAATGTTGAAAGGCAATGCTTAGCGAGAGACATTGTCAATATTGTTGCATGCGAAGGTGAGGATAGGATAGAACGGTATGAAGTTGCTGGCAAATGGAGAGCAAGGATGAAAATGGCTGGCTTCACTACATCCCCAATGAGCGCAAATGTGACTGATGCAATACTGGAACTCATTAAGCAGTATTGTGACAGGTACAAGATGAAGGATGTGATGGGTGCACTTCATTTTGGGTGGGAAGACAAGAACTTGATTGTTGCTTCAGCATGGAGGTGA 1758 0.4374 MSLVRSAELATTPYRNAKLYSIKGTDVRPGSQIFGQDKHRTMYMTDSYSSESYEKYFRDSPAEELTEPSSSGMSGNSLPAGASSYPVRASSGASVITNNPFDTSFVSLRNRDACQGNFGSDLLESGSPDPLDFDGQMRLKLQELERALLDDNEDDEDEEEEVFGTVQSMEIDAEWADPIQNILHHDSPKESSSSDSIISSISSNKEISQISPRTPRQLLLECAGALSEGNIEEASSMINELRQMVSIQGDPPQRIAAYMVEGLAARIAESGSSIYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFIAANGAITEAVKDEKKVHIIDFDINQGNQYITLIQALASRPGKPPHVRLTGVDDPESVQRSVGGLKIIGQRLVKLAEVLGLPFEFQAVASRSSLVTPSMLSCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTTPFFPRFVEAYNYYYAVFESLDATLPRESQDRMNVERQCLARDIVNIVACEGEDRIERYEVAGKWRARMKMAGFTTSPMSANVTDAILELIKQYCDRYKMKDVMGALHFGWEDKNLIVASAWR 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2569 585 ProSiteProfiles GRAS family profile. 206 585 IPR005202 -
Dere05g2569 585 Coils Coil 141 161 - -
Dere05g2569 585 MobiDBLite consensus disorder prediction 64 83 - -
Dere05g2569 585 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 192 580 IPR005202 -
Dere05g2569 585 Pfam GRAS domain family 216 585 IPR005202 -
Dere05g2569 585 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2569 Dere-ChrDere05 36243998 36245755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2569 1 585 GRAS Transcription Factor Family AT1G21450 62.647 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere05g2569 GRAS 2.3e-137 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2569 05 36243998 36245755 Dere04g1144 04 12773871 12775634 CCT
Dere05g2569 05 36243998 36245755 Dere05g2569 05 36243998 36245755 ECH