Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2568 ATGTCAAATTACGGTGTGAGTTATGATGATGAAAGTGGTGGGTTGCTTAGGTTACGTGGGAAGGTGAGAGAAAAAGCAAATTGGAGGCCTCCACAAACACTACCAGCTGTTGCCATGGAAGATTCTTCTGTAGCAACTGGTTCAGCAGTTGATCAGGACGCCAAGTCTGGTCCTCGCGGTCACTGGAGGCCCGCCGAGGATGAAAAACTCCGGCAACTAGTCGAGCAATATGGTGCCCAGAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTTAACCAGCTTGATCCCAGAATTAACAGGAGGCCGTTTACAGAAGAAGAGGAAGAAAGGCTACTAGCAGCACACCGCATTCATGGGAATAAGTGGGCACTGATAGCGAGGCTTTTCCCAGGTCGAACTGATAACGCTGTGAAGAATCACTGGCATGTTATTATGGCACGAAAGCAAAGAGAGCAATCTAAGTTAAGCGGGAAAAGAGTCTTCCAAGATGTTTGCAATGATTCTTCTAGTAACACTTCCTCCTCTAATAAAAGATCAAAATCTCAAGACCTATTTAGTTCTCCAACATTCTTTGACTTCCGGAGCCTCGACAAAAATAGGATCGTTGCAGAATGTTCTCCCTCCGCCTCTTTGGCTTCTTGGAATTTCGCATCCATGGCGAAACAAGGCAGAGATAATCATTACTTCAACTCTTGCTTTAACATTTACTACTCCGAATGCTCCAAAAGTTCAGATAAATATCTTTACAGAATTTATCCAAATTCTTCATCATCGTACGGCAGCAAGATTCTACCAAACTACAGGAAGGTTGTTCCAATTCCAAATCCTTATGGATCAGTCCTTGGTTGTGCTGGTGATGATGGGAGGAATAGGATAGTAAGGAAGGACATAATGAGTTTGTGCGATAACTCATCCACATTTGCGAAGATGAGGACCTCTACGGAACAAGAGCAAGCAGATGAACACAGAGAAGTTCCTTTCATTGATTTTCTCGGCGTGGGTGTCTCATCATCATAA 1050 0.439 MSNYGVSYDDESGGLLRLRGKVREKANWRPPQTLPAVAMEDSSVATGSAVDQDAKSGPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLSGKRVFQDVCNDSSSNTSSSNKRSKSQDLFSSPTFFDFRSLDKNRIVAECSPSASLASWNFASMAKQGRDNHYFNSCFNIYYSECSKSSDKYLYRIYPNSSSSYGSKILPNYRKVVPIPNPYGSVLGCAGDDGRNRIVRKDIMSLCDNSSTFAKMRTSTEQEQADEHREVPFIDFLGVGVSSS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2568 349 CDD SANT 62 103 IPR001005 -
Dere05g2568 349 CDD SANT 122 153 IPR001005 -
Dere05g2568 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Dere05g2568 349 SMART sant 58 107 IPR001005 -
Dere05g2568 349 SMART sant 110 158 IPR001005 -
Dere05g2568 349 PANTHER MYB PROTEIN-RELATED 59 189 - -
Dere05g2568 349 MobiDBLite consensus disorder prediction 24 63 - -
Dere05g2568 349 SUPERFAMILY Homeodomain-like 58 152 IPR009057 -
Dere05g2568 349 Pfam Myb-like DNA-binding domain 62 122 - -
Dere05g2568 349 FunFam MYB transcription factor 59 110 - -
Dere05g2568 349 ProSiteProfiles Myb-like domain profile. 59 105 IPR001005 -
Dere05g2568 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 160 IPR017930 -
Dere05g2568 349 Gene3D - 113 174 - -
Dere05g2568 349 Gene3D - 59 110 - -
Dere05g2568 349 ProSiteProfiles Myb-like domain profile. 106 156 IPR001005 -
Dere05g2568 349 FunFam MYB transcription factor 112 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2568 Dere-ChrDere05 36228368 36233700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2568 59 174 MYB Transcription Factor Family AT1G17950 80.172 3.98e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g2568 Myb_DNA-bind_6 2.4e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1143 04 12761283 12762665 Dere05g2568 05 36228368 36233700 CCT
Dere05g2568 05 36228368 36233700 Dere05g2568 05 36228368 36233700 ECH