Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2547 ATGTCTCTGTTTTCGGACTTAGAGTTGGAAACCGATGACGAAAACTCAATGCGATGCCTTTCATGCAAGGAATATTACAACCCAGTAGACGCCGGCACCTGTAAGGAGTGCTACGAGGAAGCCAACGAGACCGAGGAAGAGCTCAAGACAGAGATCGACGACTTGAAGGCCAAAGTTGAGTTCCTCAGCCTCTTGTCTCCCGTTGATCATCAGAATCGCTTGGATGCTGACGTTATTTTGGTTGCCTCCGATGAGGGTTCTGATCAACCCGCTCTCACCGTTCCGGCTCACAAGGCTGTTCTGGTGAGTCGTTCCCCCGTTTTCAGAGCAATGCTTGAAAATGATATGGAGGAAAGACGGAGTGGTACTATCAAGATCAGTGATGTATCGTATGATGTTCTCGGTGCCTTTGTTCACTATTTGTACACTGCAGAAGCTTCCCTCGATGACCAAATGGCCTGTGATCTATTAGTTTTAGCTGAAAAATATCAAGTGAAGCATCTTAAGGCATATTGTGAAAAGTTTTTGATGGCCAGACTGAACTGGGACAAAGCAGTGGCAAATTATGCCTTTGCTCACCAACACAATGCCAAACAATTGCTAGACGCAGCCATGGCATTGATTACAGACAATATGGACAAGCTTTTTAAACATGAGGAGTTTGACGATCTGGTGGAGTGTAATCCCCGTATTGTGGTGGAAATCTATGAAGCTTATCTCTCCAAGCAGGTTAATACTGCAGCCAGCGAGAATTCTTCCACAGAAAGAAACAGCAAAAAGGCATAG 786 0.4542 MSLFSDLELETDDENSMRCLSCKEYYNPVDAGTCKECYEEANETEEELKTEIDDLKAKVEFLSLLSPVDHQNRLDADVILVASDEGSDQPALTVPAHKAVLVSRSPVFRAMLENDMEERRSGTIKISDVSYDVLGAFVHYLYTAEASLDDQMACDLLVLAEKYQVKHLKAYCEKFLMARLNWDKAVANYAFAHQHNAKQLLDAAMALITDNMDKLFKHEEFDDLVECNPRIVVEIYEAYLSKQVNTAASENSSTERNSKKA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2547 261 Gene3D - 182 260 - -
Dere05g2547 261 ProSiteProfiles BTB domain profile. 76 150 IPR000210 GO:0005515
Dere05g2547 261 FunFam BTB/POZ domain-containing protein 182 255 - -
Dere05g2547 261 Pfam BTB/POZ domain 76 177 IPR000210 GO:0005515
Dere05g2547 261 PANTHER SPECKLE-TYPE POZ PROTEIN 33 253 - -
Dere05g2547 261 SUPERFAMILY POZ domain 71 177 IPR011333 -
Dere05g2547 261 SMART BTB_4 76 180 IPR000210 GO:0005515
Dere05g2547 261 CDD BTB_POZ_ZBTB_KLHL-like 76 163 - -
Dere05g2547 261 CDD BACK 189 224 - -
Dere05g2547 261 Gene3D Potassium Channel Kv1.1; Chain A 41 181 IPR011333 -
Dere05g2547 261 Coils Coil 34 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2547 Dere-ChrDere05 35989008 35991410 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere05g2547 BTB 1.3e-23 CL0033