Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2543 ATGAGGGCTTTTGCCATTTCATATGCTTTGATATCTGGTGCGCGTGTGCGAGTGCGAGCTCAAAAAGCTACAAAGCAAACCCAACGACGATTGAAGCCAAAAACCACTCTTTCCTTACTACCTTTTGAACCTTCCTCTGCGTATGAACTCCATTCAACGGCAACAAAGCGACAACGTTTGCTGATTTTGACCCAATTGCTGAAACTGACCCGCATCATGAAAATGGCGCAAACGGGCTTAGCCGGAGAAGGCGGCGACGGAAAATCAGGTGGCCGGACGGTGGTGGTGGGAGTGAAGTTGGATTCTCCTAGCAAAGAGTTGCTCACTTGGGCTTTGGTTAAAGTCGCTCAGCCTGGTGATATTGTGGTTGCTCTTCATGTTCTTGGGAACGATGAAATTGTGAATCGAGACGGCAAGGCGTCGCTTCTTTCGCTTGTCAAAACATTTGACTCTGTTCTTGCTGTTTATGAAGGTTTCTGCAATTTGAAACAGGTGGATCTCAAGCTCAAAATCTGCAGAGGCTCATCAGTCCGGAAAATCTTAGCTCGAGAAGCAAGTGCTTATTCTGCTACTCATATTATAGTGGGAACTGCCCATGGCCTTCGAAAAATACGGTCATCTGCCTCTGTAGCTAAGTACTGTGCTAAGAAATTATCCACGGACTGCTGGGTCATTGCTGTTAATAATGGAAAAGTTGTGTTCAAGAGAGAAGGCTCACCAGCAGCTCCTGTTGACTTACAAGGAATTGATCGTCGTGGCAGAAATGGCTTGCTTGGTTCAATTCACCGGACATTCAACTATAGTTCCAAAGTACTAAATGATGACAATACAGGAGGAATACATGACAAATGCAAAAATGCAGATCACAGCTTAGCTAAGGTGTTTCTGGATTCTACAGAAACCGTTCAGAAACGGAGCTGCTTAATTTGTGGTCCAACATATGCATTGCTAAATGCAGCTTGCGACCAATCTGCAGAAGAGTCTGCTGGTGATTGTGTCAAGGAGAACTCTTTGGCTATAGTGCTTGCGCAGACGGCTGAGGCAGCATCAAGTGCTAACGTTCTTTCAGTCAGAGAATTGCCTGAACTAAAACCTGGTTGGCCACTACTACACAAAACAATTTCATCAGACCGGCAATCTCCTGGTAGATCATTCGTGCGCCAGATCTCAGTGGTTCAGTGGGCAATGCAGTTGCCCAGTAGAAATCTTTCATATGCTGAAGATCATGTTCACAAACAAACCAGTTCTGATCCAGGTCAATATCAAACTTTGGCTTTAGATAGCGAGAGTGGTGCTATTGTTCCTGTGGATGCTGAAATAGGGACTGCTTCTTCACCTGACCACAATTCAAGGAGAATTCCTAAAGAATTGGAGGGTCTTCATGAGAAATACTCATCAACCTGCAGATTGTTTAAGTACCAAGAACTTTTATTGGCAACATCCAATTTCTTGCCTGAAAATTTGATCGGGAAAGGAGGAAGTAGTCAGGTTTATAGAGGCTGCCTTCCTGATGGCAAAGAACTTGCTGTTAAGATATTAAAGCCTTCTGATGATGTTTTAAAGGAGTTTCTTTTGGAAATAGAAATTATCAATACCTTGCATCACAAAAACATTATTTCTCTCCTGGGATTCTGCTTTGAGGATGGCAATCTTCTTTTGGTGTATGATTTCTTATCAAGGGGAAGCCTTGAAGAGAATCTTCACGGGAACAAGAAAAATCCACTTGTGTTTGGTTGGACTGAAAGGTATAAGGTAGCAGTTGGTGTTGCTGAGGCTTTGGACTATCTGCATAACAACGATGCTCAACCTGTAATCCATAGGGATGTAAAATCATCAAATGTATTATTATCTGAGGATTTTGAACCCCAGCTCTCTGATTTTGGACTTGCTAAATGGGCATCAACCTCATCATCACATATAACCTGTACAGATGTTGCTGGAACCTTTGGTTACTTGGCTCCAGAGTATTTCATGTATGGCAAAGTAAATGCTAAGATTGATGTCTATGCATTTGGTGTTGTACTACTCGAACTTCTTTCGGGTAGAAAGCCTATAAGTGGTGATTATCCAAAAGGTCAAGAGAGCCTCGTGATGTGGGCAAGTCCAATTCTGAATTGTGGAAAAGTTGCACAAATATTAGATCCAAGTTTGGGTAATAACTATGATAAGGATCAGATGGAGCGGATGGTCTTGGCAGCCACGCTTTGTATCAGACGTGCTGCAAGAGCTAGGCCTCAAATGAGCCTCATTACAAAGCTCCTTCAAGGTGATCCTGATGTAATAAAGTGGGCAAGGTTAGAAGTTAACGCTTCTGAAGCATCGGAAACGCTTGACGATGAAGCTTGTCCACCTTCTAATCTGCAGTCACATCTCAATCTAGCACTCCTTGATGTGGAGGATGACTCACTCTCCATGTGCAGTATTGAGCAAAATGTCTCGTTGGAGGACTACTTGAGAGGCAGGTGGAGCCGCTCATCAAGCTTTGACTGA 2490 0.4349 MRAFAISYALISGARVRVRAQKATKQTQRRLKPKTTLSLLPFEPSSAYELHSTATKRQRLLILTQLLKLTRIMKMAQTGLAGEGGDGKSGGRTVVVGVKLDSPSKELLTWALVKVAQPGDIVVALHVLGNDEIVNRDGKASLLSLVKTFDSVLAVYEGFCNLKQVDLKLKICRGSSVRKILAREASAYSATHIIVGTAHGLRKIRSSASVAKYCAKKLSTDCWVIAVNNGKVVFKREGSPAAPVDLQGIDRRGRNGLLGSIHRTFNYSSKVLNDDNTGGIHDKCKNADHSLAKVFLDSTETVQKRSCLICGPTYALLNAACDQSAEESAGDCVKENSLAIVLAQTAEAASSANVLSVRELPELKPGWPLLHKTISSDRQSPGRSFVRQISVVQWAMQLPSRNLSYAEDHVHKQTSSDPGQYQTLALDSESGAIVPVDAEIGTASSPDHNSRRIPKELEGLHEKYSSTCRLFKYQELLLATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKEFLLEIEIINTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENLHGNKKNPLVFGWTERYKVAVGVAEALDYLHNNDAQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNAKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNCGKVAQILDPSLGNNYDKDQMERMVLAATLCIRRAARARPQMSLITKLLQGDPDVIKWARLEVNASEASETLDDEACPPSNLQSHLNLALLDVEDDSLSMCSIEQNVSLEDYLRGRWSRSSSFD 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2543 829 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 92 225 - -
Dere05g2543 829 FunFam Putative receptor-like serine/threonine-protein kinase 558 770 - -
Dere05g2543 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Dere05g2543 829 SMART serkin_6 483 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2543 829 Pfam Universal stress protein family 92 225 IPR006016 -
Dere05g2543 829 Gene3D HUPs 91 228 IPR014729 -
Dere05g2543 829 ProSiteProfiles Protein kinase domain profile. 483 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2543 829 Gene3D Phosphorylase Kinase; domain 1 447 557 - -
Dere05g2543 829 CDD USP_Like 93 225 - -
Dere05g2543 829 ProSitePatterns Protein kinases ATP-binding region signature. 489 511 IPR017441 GO:0005524
Dere05g2543 829 PANTHER OS08G0249100 PROTEIN 240 765 IPR046958 -
Dere05g2543 829 Pfam Protein kinase domain 487 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g2543 829 Gene3D Transferase(Phosphotransferase) domain 1 558 765 - -
Dere05g2543 829 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 91 228 - -
Dere05g2543 829 SUPERFAMILY Protein kinase-like (PK-like) 464 758 IPR011009 -
Dere05g2543 829 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 452 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2543 Dere-ChrDere05 35938622 35942721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2543 470 750 Trihelix Transcription Factor Family AT1G68690 45.804 9.33e-76 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dere05g2543 Pkinase 3e-43 CL0016