Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2541 ATGGGCTCGTGTGGGAAATCGACTATAGTAGATGATGCCTCAGACGGGTCTGTTATTGGGCAGCATTTATGCCCAGAGTTTCCGTTGCAGTCTATTCCTGTGCAACGGTCTTTTTCAGTGGTAACTTGCAATGCGTTGGACTCTAATGTTGACCACTCCAATATGATTGAAGGTTTTATGAGTCAGTCAAGACAGTTCCACACTGGGTCTGCAAACTTTGTTGATGTTCCGGAGACATCCAGAGATTCATTGCTGATAGTGAGAAAAGATGAAAATACTGATATGTTGCTACAGCAGAAAACCTCGGACAATGATGGTCAGACTTGTTCAAGTATGTGTTCTGAAGAAATTAAAGTTTCTAACCTAGAAAGTTTCAGGTTAGACTCAGAAGAAAATCCTCACGATGAAGTTGGCCTTGAACTGCCATCAGACTTCATATTGACTAGTGGTTCACCAAAGCATTGTTTTCAGCAAGTGGGGGAGAAGGATGAGAAGAGCAACAAATTCCTCTCTACAGGAGTATCTTTAGCACTCATGGGAGGCGAAAATGATGCTGGTTTATCAACTGACTTGCTGGTTGATTGCCACCAACAAAGTGAACAGGAGGACAAAATGAGGAAGGCAGATCCATTGTTGGTGGTTGTGAACAAATGTGACTCATTAAGTGGGATTGAAGCAGATGCTTGCGAGCAGACTCCTTCACAGGGTAGTGAAGTTCCCAAGGATGTAATATATACTGAAGTAGAGAGTGTTAGTGATCAGCTGCATGATCAGAAACATGGTGAGGATGGCAACAGTCCTTCTGAAGACTTTGTTGATAGCGAAAGTATCATTGATACACATGTCCAAGTATTCTCCTCACCAGGTTGTGAAAGGATCTTGGGGAGTCTGCCTGTAGTTGATTCATCAGGTGAGGCTACCCAGTTAGAGATGGGGATTGACAAGACTGATACTGATTTTCATGCAGAAGATTTGATGAAAGTTACGGAACAAAAATTTGATGTTATGAATGAAATAATTGTTGAAATGAAGAACAATATATTGCAAGTAGAGGATAATGCCTGTAAGTTGAATAACAGTTCCTCAGAAACAGATGCCAACTGTACCTTGGAAAAAACGTTTTCTCCTGAATCAGGTCTTCCATCTGTTGTCTATATCTGCAATAGCTCTTCAAAGGATGTGGCTGATCTCCTTCCCAAGGACGCTAACAATTCCATCAGTTGTGGTAGTGTTGTGGGCAACTCTGGACAGGCAGATAGTACTAGGAAAGATATTAAAGAAGTTGATTGTATCCCCGAAAGTATGAATTCTGACAATGCGTCTTTGCCTTTTCGAAGTAATAGTCAAAGAAGTAAATCTGGTCATAAGACTCAGTCCAAAAGGGCTTCAAGAAAATGCAAGAACAAAGCCAGTTTGCCACTTCTAGGTGGAGGTATGAAGGTAATCTTAGAGGCTGCTAGAAAGAAAAGAAGCTGTTTCTCTAAACCTGCTCGTTCTACTATCTGGGGATTGGTGGGAAACATTGATAAGTTTTTTGAACGGGAGAATGAGATTGGGGTTGATGAAGTTGTCTGCCAAAATTTGGGAAAGGCAAGAGGTTCCCGTAAAAGTGGCAAGGGAAAAAAGAATGGTGCAATTTCTAGCCCAGTGAGTTCAATGAAGAAGTGCTGTGCTTCAACTACTCGTGTTCGTCTGAAGATCAAACTGGGGAAGGAAGTTGATTTAAGTTGTTCAAATGTCTTAGTTCCAGAGAATTTGAGTGGCTCAGGTTCTGCTCCTAACGTGGGAACTGCTTCAGGCTCCCAGGAAGTAGTGAGCAATGCCGTAGACAAAGTTTCAGAAGATGTTGCAGTGGGCAAGTTTGAATCTTTAAAAAACAACCTGGACGAGGATGCTCTTGTTCTGAATGGAAAAATGGCAAATCACCATGTAGAAACTACTGCAACATTGGAAATGTCAGAAAAGTCAGATGGAGTGGCAGAGGAACTTTGTCTTATAATTCCTCCGGAGAGGATTGTTGAACCGTTGAGAGAGGCAGGTACTGATAAGAATATGGATCCTGGAACTTCACCTGATTCGGAAGTTATCAATTCAATTCCTGAAGTCCAGGTTGGAGAAAGACACCAACAAGGCGTGCATAATGCCATTTTTGATTCTTCTAAAGTTTCCAATTCTCTTTTGGAGGTTGCTGGTTGCAAGAGAGGGAAAAAGAAAGATAAGCCAGGTAGTTCTATTGTTGAAGATGGATCACAGGGTCCACCAAGGAAAAATAAAGCTAAGCACTCAAAAAATCGTGGACGTAAGAAGAATTTCAATGGTGTGGTTGGCTCCAAAGATCTTCTTACTTCCACTGATACAAATGCTGCAAGCAACTTATTAGGCTGTAAAGAATTATCCACTGAATCATTGCCCCTATCTAAAGAGATTGAACTTGATGACTCTACTGAGGCTTTGAAAGTCAAAAGTGGCATGAAAGTTAAGACAACTTGCAACCCAGATGTTGACCGTGAACTTTCAGAATTCCAGGGCATTGAGACTTTGCTATCTTCTGCAAGATCTACTGGGCAGAAACTTCCTGAAACTCGTAAATCTAGTAAAGTCAGCAAGACCAAATCAAAAGCTTCTGACTTGAAGAGCAGGAAAAAGACTAGTAGCAGACGAAGGGAGAAACAGCTGAAACCTATAAAGAAGAGTGAAGTTAAAGGAGAAGGTGTGTCTGAAAATGCTATCGGTGAAGTGGAAGATCGCCTGCATACAGAAAATGGGGTTGATGGAAATTATAATTTGGATGCTACTGGAAAAATTAATGCTGGTGATGACAAAGTATCAGTGAATGCATCCAATTTGGACATGGCAATGGGTGTTGGTTTGGAGGAACAACATCCATCACCACATAATGCATGGGTGCGCTGTGATGATTGTCACAAATGGCGGCGTATTCCAGTTGAGCTTGCAGACCTAATTGAAGAAACAAAGTGCACCTGGACCTGTAAGGACAGCAATAATAAAGTCTTTTCTGATTGCTCTATTCCCCAAGAAAAGTCAAATGCCGAGATCAATGCAGAGTTGGGATTATCAGATGCATCTGGTGAAGAAGATGCTTATGAAGACTGTAAAAATTATAAGAAATTGGAATATCGACACCTAACGGTTCACCAGGAGTCGACTTTTACTCATATCCTTACCAATGAGTTTCTGCATCGGTGCTGCAGAACACAGACTATTGATGAGGGAACTTCATTTCTACTTGTTTTGGGGGCTTGTGGAGGAGGCAGGGGTATAATGGTTTGCCATTGTAAACCACCATCAGAAGGTCGATTTGGTTGTGGGGATGAATGTCTTAATCGGATGCTCAACATTGAATGTGTTCAAGGAACCTGCCCTTGTGGGGATCTTTGTTCAAATCAACAGTTCCAGCAACGCAAGTATGCCCACCTGACATGGTTTAAATGTGGGAAAAAAGGTTATGGGTTGAAGGCGCTTGAGGATATATCGAAAGGGCAGTTTCTTGTTGAATATGTTGGAGAGTTTGAGTTGACTAGTACCATATGCTCCAATTTGATGAAGGAGCAAGTAGTTCACCCGGCTTCCTTTTGCTGCTCTCCTAGGGTTAAAGAACTGCTTATATCTAACAATAAACTTTTGCTGCTTGTTAAGGATGGGAAAAGGGTACTTGATATGCATGCTTATGAGGCACGACAAAGGGAGTATGCTTTCAAGGGTCATCGACATTTCTACTTCATGACTTTGAATGGCAGTGAGGTGATAGATGCAAGTGCAAAAGGAAACTTGGGGCGTTTCATCAATCATAGCTGTGATCCCAATTGTCGTACAGAAAAGTGGATGGTGAATGGTGAAATCTGTATTGGATTGTTTGCATTGAGGGATATTAAGCAGGATGAAGAGGTGACATTTGATTACAACTATGTAAGGGTTTTTGGTGCTGCTGCAAAAAAATGTTATTGTGGTTCATCTCTATGTCGGGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAAGTCATTGTTCAAGGTGATTCAGATGAGGAATTTCCTGAACCAGTGATGCTCACTGAAGATGGTGAAATTGAAGCTGTTATACCTAGATCCAATGTTGTTACGCAGGCTGATGGGAACTTATTAGAGGACAGGGATCTAGTGGACAACTCTAGAAGTGCTCTAGTGCAAGATAATAATCAGGAGAAAGAGAATTCTATAAACCCTGCCCCTGCTATTTCCCAATTACCCTGCCCATTAAAAGCGGAAGATTCAATGGGCAAGTTGCCATCTTCTGTTCATGTGGAAGACATTTCCCAAAAATTGAAGGATGCAACTGGCAAATTGATGCCTGCTGTCCAACAACGATATGCATTGGAAGCAGAACTTCCTGACAAAACTTCTTCCGTTCAAAGATTGGATACATCTTCCACTACAACCATCAGCAAAATGATATCAAATTTTGTTAAGTATAATAGGGAATCCAAGTCTGAAATGGTTGAAGGCAGGCCTGATTTTTCAAAATCACGTCTGCTTGTGAAGATTTCTCGAGCAAATGGTTCTGTTAAAAAGGGAAAAGTTCATATTAGTCATTCAAATGGCATCAAAGCTGAGGTGACAACCAACAGATTGCAGATATCATCTATTAAACCTAAAAAAGTGGTGGAAGGTTCTTCCAATGGCCGTTTTGAAGCAGTTCAGGAGAAACTTATGGAGTTGTTGGATGAAGATGGAGAAGGAGGAATTAGCAAAAGAAAAGATGCAACCAAAGGCTACTTAAAGCTTCTGCTTCTCACTGTGGCATCAGGTGATAGGAATAATGGCGAAGCAATTCAAAGCAATCGAGATCTTTCGATGATCCTTGGTGCCCTTCTGAAAACAAAATCTAGAGCAGTGCTGAATGATATAATTAACAAAAATGGTTTACAGATGTTGCATAACATAATGAAGCAGTACAGGCGGGATTTCAAGAAAACACCAATACTGCGGAAGCTTCTTAAGGTCTTAGAGCACCTAGCAGCAAGCAAGATATTGACATTTGAACACATTAATGGCGGCCCCCCTTGTCGTGGAATGGAGAGCTTTAGGGATTCAATGCTGTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGGGACAGATGGATTCCAAGACCCTTCAGAAAACATGGTTATATGGACCGGGATGATTTTAAGGTGGAATCTCACAGGAATATCAACTGCAATAGATTTTCAGCATTGCACAGCCATAGGCGTGAGCAAGATGTAAGACCCACAGAAGCCATAGATTGTGTCCAGCAGTCAAAGCATGTGATAACTTCGGCAGATACTGCTGCCCAGGAGGGCTGCTCTGCCCCATCTTTAGATGACTGTAAAATTGATGGGACAAAAAGGCGTAAGCGGAAAAGCAGATGGGATCAACCTGCAGTGACAATTTCAGATTCATCATCTAGTCCGTGTAAGAAACAAAATACTGACTCTGGGCTATCAATCCATGCAGCTATTAACTCTTTTGATGGAAGTCAGAACGTTACTGAGGATTTCCCCCCAGGGTTTTCATGCCCAGCTCAACCGCAATTGAGTTATTTCAATGCTTCACCACACTCTGTTGATCTTGCTTTGCAAAATGTGGGCAATTCTGAGTGTCCCCCAGATACAGTAATCGGGCATCCAAAGGAGAAATTTAATTCTCGCTTGTCTGTCTCATACGGAATGCCATTATCTCTTGTCCGGGAGTATGGAACACCTCATGATGAAATATCAGAGAGTTGGGTGACTGCGCCAGGCATGCCATTCAGCCCGTTTCCTCCACTGCCCCCCTATCAATGGGATAATAAAGACTGTCAACTGTCTAATTTTACTAATGCTGCCGCCATAGATCAGCCTGTCGAAGCACACCAATGGGATACAAGTGATCCAGTAAGTTGTTACTCTGATGACATGACTCCCAGCACAACCGGTACTAGCCCTAAAGACATTGACCTTTTACATGAGGACGATAAATGCCTTTATAAACGAGTGAAGGGTTCCCCTTGTGATTTGGGAAGGACGTACTTTAGGCAGCAAAAATGGAATAATTCAAAAATACATCGACCATGGTTCAGGAGGAATGCATGGGGATGTAATGGCAACAACACTACTGGTGGCTTGTGCAGTATAGGTGTAGATGATTTAAATGAGTCAAAAGTTACATGTTCTTCTGAGGATGTAATTTGTAGAGCGGAGGAAGGTGACAATAATGTTTAA 6261 0.4189 MGSCGKSTIVDDASDGSVIGQHLCPEFPLQSIPVQRSFSVVTCNALDSNVDHSNMIEGFMSQSRQFHTGSANFVDVPETSRDSLLIVRKDENTDMLLQQKTSDNDGQTCSSMCSEEIKVSNLESFRLDSEENPHDEVGLELPSDFILTSGSPKHCFQQVGEKDEKSNKFLSTGVSLALMGGENDAGLSTDLLVDCHQQSEQEDKMRKADPLLVVVNKCDSLSGIEADACEQTPSQGSEVPKDVIYTEVESVSDQLHDQKHGEDGNSPSEDFVDSESIIDTHVQVFSSPGCERILGSLPVVDSSGEATQLEMGIDKTDTDFHAEDLMKVTEQKFDVMNEIIVEMKNNILQVEDNACKLNNSSSETDANCTLEKTFSPESGLPSVVYICNSSSKDVADLLPKDANNSISCGSVVGNSGQADSTRKDIKEVDCIPESMNSDNASLPFRSNSQRSKSGHKTQSKRASRKCKNKASLPLLGGGMKVILEAARKKRSCFSKPARSTIWGLVGNIDKFFERENEIGVDEVVCQNLGKARGSRKSGKGKKNGAISSPVSSMKKCCASTTRVRLKIKLGKEVDLSCSNVLVPENLSGSGSAPNVGTASGSQEVVSNAVDKVSEDVAVGKFESLKNNLDEDALVLNGKMANHHVETTATLEMSEKSDGVAEELCLIIPPERIVEPLREAGTDKNMDPGTSPDSEVINSIPEVQVGERHQQGVHNAIFDSSKVSNSLLEVAGCKRGKKKDKPGSSIVEDGSQGPPRKNKAKHSKNRGRKKNFNGVVGSKDLLTSTDTNAASNLLGCKELSTESLPLSKEIELDDSTEALKVKSGMKVKTTCNPDVDRELSEFQGIETLLSSARSTGQKLPETRKSSKVSKTKSKASDLKSRKKTSSRRREKQLKPIKKSEVKGEGVSENAIGEVEDRLHTENGVDGNYNLDATGKINAGDDKVSVNASNLDMAMGVGLEEQHPSPHNAWVRCDDCHKWRRIPVELADLIEETKCTWTCKDSNNKVFSDCSIPQEKSNAEINAELGLSDASGEEDAYEDCKNYKKLEYRHLTVHQESTFTHILTNEFLHRCCRTQTIDEGTSFLLVLGACGGGRGIMVCHCKPPSEGRFGCGDECLNRMLNIECVQGTCPCGDLCSNQQFQQRKYAHLTWFKCGKKGYGLKALEDISKGQFLVEYVGEFELTSTICSNLMKEQVVHPASFCCSPRVKELLISNNKLLLLVKDGKRVLDMHAYEARQREYAFKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEEVTFDYNYVRVFGAAAKKCYCGSSLCRGYIGGGDPLNAEVIVQGDSDEEFPEPVMLTEDGEIEAVIPRSNVVTQADGNLLEDRDLVDNSRSALVQDNNQEKENSINPAPAISQLPCPLKAEDSMGKLPSSVHVEDISQKLKDATGKLMPAVQQRYALEAELPDKTSSVQRLDTSSTTTISKMISNFVKYNRESKSEMVEGRPDFSKSRLLVKISRANGSVKKGKVHISHSNGIKAEVTTNRLQISSIKPKKVVEGSSNGRFEAVQEKLMELLDEDGEGGISKRKDATKGYLKLLLLTVASGDRNNGEAIQSNRDLSMILGALLKTKSRAVLNDIINKNGLQMLHNIMKQYRRDFKKTPILRKLLKVLEHLAASKILTFEHINGGPPCRGMESFRDSMLSLTEHDDKQVHQIARSFRDRWIPRPFRKHGYMDRDDFKVESHRNINCNRFSALHSHRREQDVRPTEAIDCVQQSKHVITSADTAAQEGCSAPSLDDCKIDGTKRRKRKSRWDQPAVTISDSSSSPCKKQNTDSGLSIHAAINSFDGSQNVTEDFPPGFSCPAQPQLSYFNASPHSVDLALQNVGNSECPPDTVIGHPKEKFNSRLSVSYGMPLSLVREYGTPHDEISESWVTAPGMPFSPFPPLPPYQWDNKDCQLSNFTNAAAIDQPVEAHQWDTSDPVSCYSDDMTPSTTGTSPKDIDLLHEDDKCLYKRVKGSPCDLGRTYFRQQKWNNSKIHRPWFRRNAWGCNGNNTTGGLCSIGVDDLNESKVTCSSEDVICRAEEGDNNV 2086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2541 2086 Pfam CW-type Zinc Finger 968 1014 IPR011124 GO:0008270
Dere05g2541 2086 CDD SET_SETD2 1143 1332 IPR044437 GO:0010452|GO:0046975
Dere05g2541 2086 MobiDBLite consensus disorder prediction 862 879 - -
Dere05g2541 2086 SMART shorttest3 1092 1143 IPR006560 GO:0005634|GO:0042054
Dere05g2541 2086 SMART set_7 1144 1314 IPR001214 GO:0005515
Dere05g2541 2086 FunFam Histone-lysine N-methyltransferase 960 1021 - -
Dere05g2541 2086 ProSiteProfiles SET domain profile. 1136 1308 IPR001214 GO:0005515
Dere05g2541 2086 MobiDBLite consensus disorder prediction 892 906 - -
Dere05g2541 2086 Gene3D - 957 1021 - -
Dere05g2541 2086 Pfam AWS domain 1107 1141 IPR006560 GO:0005634|GO:0042054
Dere05g2541 2086 Gene3D SET domain 1023 1340 IPR046341 -
Dere05g2541 2086 MobiDBLite consensus disorder prediction 1787 1831 - -
Dere05g2541 2086 PANTHER SET DOMAIN PROTEINS 464 1816 - -
Dere05g2541 2086 Pfam SET domain 1155 1308 IPR001214 GO:0005515
Dere05g2541 2086 MobiDBLite consensus disorder prediction 433 467 - -
Dere05g2541 2086 ProSiteProfiles Zinc finger CW-type profile. 962 1016 IPR011124 GO:0008270
Dere05g2541 2086 ProSiteProfiles Post-SET domain profile. 1316 1332 IPR003616 -
Dere05g2541 2086 MobiDBLite consensus disorder prediction 850 906 - -
Dere05g2541 2086 MobiDBLite consensus disorder prediction 732 779 - -
Dere05g2541 2086 SUPERFAMILY SET domain 1092 1329 IPR046341 -
Dere05g2541 2086 SMART PostSET_3 1316 1332 IPR003616 -
Dere05g2541 2086 ProSiteProfiles AWS domain profile. 1092 1142 IPR006560 GO:0005634|GO:0042054
Dere05g2541 2086 MobiDBLite consensus disorder prediction 434 453 - -
Dere05g2541 2086 MobiDBLite consensus disorder prediction 1813 1831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2541 Dere-ChrDere05 35908362 35923059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2541 1126 1332 Su(var)3-9 homologs AT1G73100 28.440 1.07e-14 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere05g2541 SET 1e-20 No_clan