Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2533 ATGGGCCTGATGGTACCTCTGAAAAAGCCTGCATCAGTAGTACTCGCTACTCTTTACTCTTGTCCTTTTACATATGTGCCCTTACATTCCCTTATGACAATGAAATGCGATTCAAATAATTTTGTGCTAAGAAAGAAATCTACAAGAGAGCAGAGAGAAACTCAAAGAAAGCTTCATTTTGAATTCGTATTCAAAAACTCCTTCTTGGGTTTGATTTTTAAAAGTAAGATGTCAACCCAGAGTCGTCGTTCGTCGTTTTCATCCTCCACGACATCGTCGTTGGCGAAACGGCATGCATCGTCGTCGTCGGAGAATGTGGGAAAGGCTATGGCCGTCCCTTCTCACATGGCTAAGAAGCGAGCGCCTCTCGCTAACTTGACCAATCTAAAGAATGTGTCTCACACTGCTTTGCGGAACTCTCTGTCATCATCTACTCTGGTACCATCTGCAACTAAAATTGCTAAGACAAACAAGGAACCTACCTCGTCAAATGTTAAATCAAGTGCAGTTATTTTCCCAAAGGTTAGTTCACTTACACAAAGGGATGAAGCAGCTCCTACACTTGCAGCTTTCGCTGTTCCAGTTTCTACCGACATGGATGCAAAATCAAATGCAATTGTGTTTCCTAAGGTTGCTTCTATTCCACAAAAGGATGAAGCTATTCCGACTGTCTCCGCTTCCACTGTCCCTCTTTCAAGCAGCATGGATGTTTCTCCAAGTAAATCAGATGGGATGTCTGTCTCCATGGACGAGACAATGTCTACTTGCGATTCATTCCAGAGTCCTGAAGTTGAATATATGGACAACAGCGATATTTCAGCTGTTGATTCTATTGATAGAAAGACATTCAACAGTCTGAACATCTCCGACAACTCAGATACAGCAGGCAACATTTGTAACAGAGACATACTTGTTGAGTTGGAAAGAGAAGACAAAATCGTCAATGTTGACAATAATTACATGGATCCACAACTCTGTGCGACCTTTGCTTGTGACATCTACAAGCATTTGCGTGCATCTGAGGCAAAGAAAAGGCCTTCTACGGATTTCATGGAGAGAATTCAAAAGGACATAAATCCCAGCATGCGTGCTATATTGATTGACTGGCTTGTGGAGGTGGCTGAAGAGTATCGGCTTGTGCCTGATACATTGTATTTGACAGTGAACTACATAGATCGTTATCTCTCAGGAAACGCTATGAACAGGCAAAAATTACAATTACTTGGAGTTGCCTGCATGATGATCGCCTCACGATTTGTTCGCGCAGCTCAAGGAGTCAATGAGGTACCTTCGTTGCAATTAGAGTGCTTGGCCAACTACATTGCTGAACTGTCTCTCTTGGAGTACAACATGCTTCGTTATGCCCCATCGCTTATCGCTGCTTCTGCAATTTTCCTGGCCAAATATCTACTCTTCCCTTCAAAGAAACCATGGAATTCTACTTTGGAGCATTACACCCTTTACCAGCCTCGTGATTTGTGTGACTGCGTAAGGGATCTCCATCGTCTGTGTTGCAACACCCACAGTTCTAATTTACCCGCAATCCGAGAGAAATATAGTCAACACAAGGGAATTAAAAGAAGACGGTCAAGAGAACGTAAGCTTAAATTTAAACAGTACGTTGGTTCTGATATGACCAATTTGCTATTTATCTCATCAGATAACTCGTCCACACCAAATTTGTTTACAAAGCCAGATTAA 1701 0.4233 MGLMVPLKKPASVVLATLYSCPFTYVPLHSLMTMKCDSNNFVLRKKSTREQRETQRKLHFEFVFKNSFLGLIFKSKMSTQSRRSSFSSSTTSSLAKRHASSSSENVGKAMAVPSHMAKKRAPLANLTNLKNVSHTALRNSLSSSTLVPSATKIAKTNKEPTSSNVKSSAVIFPKVSSLTQRDEAAPTLAAFAVPVSTDMDAKSNAIVFPKVASIPQKDEAIPTVSASTVPLSSSMDVSPSKSDGMSVSMDETMSTCDSFQSPEVEYMDNSDISAVDSIDRKTFNSLNISDNSDTAGNICNRDILVELEREDKIVNVDNNYMDPQLCATFACDIYKHLRASEAKKRPSTDFMERIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMNRQKLQLLGVACMMIASRFVRAAQGVNEVPSLQLECLANYIAELSLLEYNMLRYAPSLIAASAIFLAKYLLFPSKKPWNSTLEHYTLYQPRDLCDCVRDLHRLCCNTHSSNLPAIREKYSQHKGIKRRRSRERKLKFKQYVGSDMTNLLFISSDNSSTPNLFTKPD 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2533 566 PANTHER CYCLINS 434 521 IPR039361 -
Dere05g2533 566 CDD CYCLIN_AtCycA-like_rpt2 418 523 - -
Dere05g2533 566 MobiDBLite consensus disorder prediction 83 108 - -
Dere05g2533 566 MobiDBLite consensus disorder prediction 230 249 - -
Dere05g2533 566 Gene3D - 332 345 - -
Dere05g2533 566 Gene3D - 421 523 - -
Dere05g2533 566 SMART Cyclin_C_2 410 532 IPR004367 -
Dere05g2533 566 FunFam Cyclin-A1-1 346 417 - -
Dere05g2533 566 Pfam Cyclin, N-terminal domain 332 439 IPR006671 -
Dere05g2533 566 SUPERFAMILY Cyclin-like 322 421 IPR036915 -
Dere05g2533 566 SMART cyclin_7 430 502 IPR013763 -
Dere05g2533 566 SMART cyclin_7 368 427 IPR013763 -
Dere05g2533 566 MobiDBLite consensus disorder prediction 83 109 - -
Dere05g2533 566 Gene3D - 346 419 - -
Dere05g2533 566 SUPERFAMILY Cyclin-like 418 523 IPR036915 -
Dere05g2533 566 ProSitePatterns Cyclins signature. 363 394 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2533 Dere-ChrDere05 35849491 35855058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2533 80 523 Core Cell Cycle Gene Families AT1G44110 51.308 6.10e-148 432