Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2524 ATGTCCGTACCTTCAGTCCTGCCTCCATTGACGTTGCTATCATTCAGGTCCTTCTCAGTTTGTTCTTTTGGTTCTTCTCTGATAAGTAATTTCACCATTGCTTATGGATTTCGTCTGCTGAGCTTGCCTGAAGATCTGAATTCTATTCAGCATCCTACAAGGAGGGCTAAAGTGGAGGGCAAATGTCAAAGTCTCCCTCACCTGAACCGCCAGAGTCCATTTATTCTTCTTCTTGGACTAGGTCAGGAAACTAAAGTGGCCACAGAAATGGACGATCCAGAATCTACAATGGCTAGAGTTGCTAATTTTGTTGAGCAACTGCATGGTAACATCTCATCACCACTTGAGAAGGAAATTATCACAGCACGTTTGCTGAGTATTGCCCGGGCAAGAAAGGATGCTAGAACACTTATTGGTTCTCATGCCCAAGCAATGCCGTTGTTCATAAGCCTTCTCAGAAAAGGAACCCCTCTGGCAAAAGTTCATGTTGCTGCCACTCTGAGTGTCCTGTGCAAAGATGATGATTTAAGGTTAAAAGTACTTCTTGGTGGTTGTATCCCACCGTTACTGTCACTTTTAAAGTCTGAATCCACAGAGGCAAGGAAGGCGGCAGCTGAAGCAATATATGAAGTATCCTCTGGTGGTCTTTCAGATGATCACGTTGGTACGAAGATTTTTATTACAGAAGGAGTGGTTCCAGCCTTATGGGATCAACTAAAACCAAAGAACAAGCAAGACAAAGTTATGGAGGGTTTTATTACTGGGGCATTGAGAAATCTGTGTGGTGACAAAGATGGCTACTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATTATCGTGGGTCTCTTGTCTTCAAACAATGCTGTTGCTCAGTCAAATGCAGCTTCTCTACTGGCACGACTGATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGAATCTGGAGCAGTCAAAGCTTTACTATGGCTTGTTGGTCAGGAAAATGATATTTCTGTACGTGCAAGTGCTGCTGATGCTCTAGAGGCTCTTTCTTCAAAGTCAGCTGGGGCTAAGAAAGCCATTGTCAATGCAGATGGTGTTCTAATTCTTATTGGGGCTATAGTTGCTCCTTCCAAAGAATATTCAAAGAAGTTTCTTATCGGGCTTATAACTATGGCTACTGCTGATGTGCAAGACTATCTGATACTCTCCTTGACAAGCTTGTGCTGTGAGAGGGTGGGACTATGGGAGGCCATAAACAAAAGAGAAGGCATCCAGTTACTTGTATCCATGCTGGGACTATCCAGTGAGCAGCATCAAGAGTATGCAGTTCAGTTGCTATCAACTTTAATTGATAAGGTTGATGACAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCTCTGTTGGTTCAGTTATTAGAGACAGGATCCCCGAAAGCAAGAGAGGAAGCTGCTCATATTCTGTGGAATCTGTGCTGTCACAGTGAAGATATCCGTGCATGTGTTGAGAGTGCAGGGGCCATCCCAGCATTCTTATGGCTTTTAAAAATTGGTGGATCAAGAGGACAAGAAGCTTCTGCCATGGCACTGACTAAGCTTGTGCGAATAGCTGATGCTGCTACCATCAATCAGTTGTTAGTGTTGCTTTTTGGGGACTCTCCAAGCTCAAAAGCCCATACAATTCGTGTTTTAGGTCATGTACTTACTATGGCTTCACGGAAGGACCTCCTGCGAAAGGGTTCTGCAGCTAATAAAGGGTTGAGATCTCTAGTTCAGGTTCTCAACTCATCAAATGAGGAAACCCTGGAATATGCAGCTTCTGTCCTAGCTGATTTATTCAGCACAAGACAAGACATTTGTGATAGCCTGGCTACTGATGAGATTGTGCTTCCTTGCATGAAGCTTTTGACCAGCAAGACTCAAGTTGTTGCAACTCAGTCAGCTCGAGCATTGAGTGCTCTCTCTCGTCCAATAAAGAGTAGATCCGCAAATATGATGCCTTATATTGCAGAGGAGGATGTCAAGCCACTAATTAAGTTGGCTAAATCTTCCTCTATTGATGCTGTTGAAACTGCAGTTGCTGCACTGGCCAATCTTCTCTTTGATCCCTCTATTGCTGCTGAAGCTCTGGCAGGAGATGTTGTTTCATCTTTAACAAGAGTTCTGACGGAAGGAACTTTGGAAGGTAAACAAAATGCATCACGTGCACTTCATCAGTTGCTGAATCTTTTTCCAGTTGGTGATGTCCTCAAGGGGAATGCTCAGTACCGCTTTGCTGTTCTTGCACTTGTTGATTCTTTAAACGCAATGAATATGGATGGAACTGATGCTGCAGATGCCTTAGAAGTAGTTGCGCTGCTTGCCAGGACAAAAGAGGGTCTCTGTTCCACTTACCCTCCATGGTCTGTACTCTCTGAAATGCCATCAAACTTAGAGCCTCTTGTATGCTGCCTGGCTGAGGGGCCTCCCTCAGTGCAAGACAAGGCAATTGAAATTCTGTCTAAACTTTGTGGAGATCAATTATTTGTTCTTGGGGATTTGTTGGCCACTAGGCCAAGATCCATTAATGCATTAGCTGATAGACTAATGAACTCCTGTTTAGAAATTAAAGTTGGAGGGGCTGCTTTACTTTTTTGTGCTGCAAAGGGGCATAAAGAGCTGTCAATGGATGTACTTGACAATTCTGGGTATCTGAAACCATTAATCTATGCTTTAGTTGATATGATGAAGCAGAACTCTAGCTGTTCATCAGAAATTGAAGTACAAAATTCTACAGATTTTATGGAGAGAAATGCATTTCAGGAAGTCTTGTGGTTGCTCTCAATTATTGCTTCTTTTGATACAAAGAACAGACTCATAATTATGGAAGCTGGTGGACTTGAGGCTCTCTCTGACAAGCTTGTAAGCCATGCTTCCAATCCACAGGCAGAATTTGAGGATACAGAAGGAATATGGATCACTGCCTTGCTCCTGGCCATTTTGTTTCAAGATGCAAATGTTGTTCTATCTCCAGCAACAGTGTGCATCATACCTTCTCTCACTCATCTGCTACGATCTGATGAAGTGAATGATAAATATTTTTCTGCTCAGGCTATGGCTAGTCTTGTTTGTAATGGTGATAAGGGAATAAATCTTGCTGTTGCAAACTCAGGTGCTGTTACGGGATTATTAACTATAATTGGTAATATAGAGTCAGATATGCCAAACCTTGTTGCTTTATCAGACGAATTTTCACTGGTGCGAAACCCTGATCAAGTTGTTTTAGATCACCTTTTTGAAATTGAAGATGTTAGAGTAGGATCTACTGCTCGGAAATCTATACCTCTCTTGGTGGATCTCTTGAGACCAATACCAGAAAGGCCTAGTGCTCCACCAGTTGCTGTTAAACTCTTGACACGCCTTGCAGATGGAAGTGATACAAATAAATTAATCATGGCTGAAGCTGGCGCTTTGGAAGCTTTGACAAAATACCTGTCTTTGAGTCCACAAGACTCAACTGAGGCCAGTATTTCTGAGTTGTTAAGAATACTCTTTTGCAATTCTGACCTTATTAAACATGAAGCTTCAGCAAGTTCCCTGAACCAACTCATTGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAGAGCACTTCATGAACTTTTTGATGCTGAGAGTATTAGAGATTCAGAATTAGCTAAACAGGCCATTCAACCTTTGGTTGACATGCTTAATACAACCTCAGGTAGTGAGCAGGTGGCTGCTCTTATTGCATTAATCAAATTAACGTCAGGAAATTCTTCAAAAGCATCTCTTTTTGCTGATGTGGAAGGGAATCCACTTCAGAGTTTATACCAGATATTGTCTTCTGCTTCATCCTTGGAACTAAAGAGCAATGCTGCACAACTTTGCCTTGTTCTTTTTGCTAACAGGAAGATCAGAGCTGATCCTCTTGCCTTAGAATGCATAGAGCCCCTTATATCACTGATGCAGTCTGATTCTGCCACAGCAATAGAAGCTGGGGTTTGTGCTTTTGAGAGATTGTTGGAAGATGAACAACATGTGGAGCTTGCAGTAGCCTATAATGTTGTAAATCTCCTTGTCAGTTTGATGGCTGGTTCAAACTATCAGCTAATTGAGGCTGCCATATCTGCCCTCATCAAATTGGGCAAAGACAGGACTCCGTGCAAACTAGACATGGTGAAAGCTGGTATTCTTGATAATTGTCTGAAGTTACTGGAACTGGCACCTAGCTCATTGTGCTCCACAATTGCTGAACTATTCCGCATTTTAACAAATAGTAATGCAATTGCTAGAAGTTCAGCTTCTGCAGAAATTGTAGAACCCCTTTTTCAAGTTTTGCTCCGTCAAGATATTGACTTGTGGGGACAGCATAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAGCCACAAAGTCTTGCAACCTTAAAACTAACTCCTAGTCAAGTTATTGAGCCCTTGATTTCATTCCTGGAATCGCCATCCCAAGCCATTCAGCAGCTTGGCACAGAACTGTTGTCTCATCTTCTTGCACAGGAACATTTTCAACAAGATATTACTACCAAAAATGCAGTTGTTCCCCTTGTTCAACTTGCCGGAATTGGAATACTAAGCTTACAACAAACAGCAATAAAAGCGCTGGAGAAAATATCCATAAGCTGGCCAAAGGCTGTTGCTGATGCAGGAGGCATTTTTGAGCTTGCAAAAGTTATTATTCAAGATGATCCTCAACCACCGCATGCATTCTGGGAATCAGCTGCTTTGGTTCTTTCTAATGTATTATGTTCCAATGCTGATTATTATTTTAAGGTCCCTGTGGTGGTTCTTGTAAAATTGTTGCACTCAAAAGTTGAAAATACAATTAGCATTGCTCTTAATGGCCTAATAATTCATGAAAGAAGTGATGCTTCAAGTGCTGAACAGATGATGGAAGCTGAAGCTATAGATGCTCTGTTAGACCTTTTAAGATCTCATCAATGTGAGGAAGCATCTGGCAGATTACTTGAAGCTTTATTCAACAATGTGAAAATAAGAGAGATGAAGGCATCTAAGTATGCAATAGCACCTTTGTCTCAGTATCTCTTAGATCCACAGACCAGATCCCAGTCTGGCAAGCTTCTCGCTGTTCTAGCACTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGAGCCAGTGCTTCCGTTTCTGCTTGTCAAGCTTTGGTGAGTTTACTTGAAGATCAGCCAACTGAAGAAATGATGATGGTTGCTATTTGTGCATTGCAAAACTTTGTCATGAACAGCAGGACTAATAGGCGAGCTGTTGCAGAAGCTGGTGGCATACTGGTGATTCAGGAATTGCTACTGTCTCCAAATCCAGACGTTGCTAGACAGGCAGCATTACTGATCAAATTTTTGTTCTCTACTCACACACTACAAGAATATGTGTCAAATGAGCTGATCAGATCTCTGACAGCTGCACTGGAAAGAGAGTTGTGGTCAACTGCCACAATCAATGAAGAGGTTTTGAAAACTCTGCATGTTATATTCATGAACTTCCCTAAGCTCCACATATCTGAAGCAGCAACACTTTGCATTCCTCATTTAGTAGGGGCACTCAAATCTGGTGGTGAAGTAGCTCAGGACTCCATACTAGACACCTTGTGCTTGCTAAGACATTCTTGGTCAACCATGCCAATAGATATAGCAAAGTCTCAGGCTATGATTGCTGCCGAAGCCATTCCCATCTTGCAAATGCTCATGAAAACCTGTCCCCCAAGTTTCCATGAGAGAGCAGATAGTCTTCTGCATTGCTTGCCAGGTTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAAGCAAGCTATGGGAAGCACAAATGCATTTTGCCGGTTGACAATTGGCAATGGTCCTCCCAAACAAACCAAGGTTGTGAGTCACAGTATATCTCCAGAATGGAAAGAAGGATTCACGTGGGCATTTGATGTACCTCCGAAGGGTCAAAAGCTGTATATCATATGCAAAAGCAAGAATACTTTTGGGAAGGCGACTCTTGGAAGAGTTACTATCCAAATTGATAAAGTGGTAAATGAAGGAGTTTACAGTGGATTATTCAGTCTTAATCATGACAGAAACAAAGATGGCTCTTCTCGAACAGTTGAAATTGAGATTATATGGTCCAACAGGATCTCTGATGTTGACCTTTGA 6192 0.4226 MSVPSVLPPLTLLSFRSFSVCSFGSSLISNFTIAYGFRLLSLPEDLNSIQHPTRRAKVEGKCQSLPHLNRQSPFILLLGLGQETKVATEMDDPESTMARVANFVEQLHGNISSPLEKEIITARLLSIARARKDARTLIGSHAQAMPLFISLLRKGTPLAKVHVAATLSVLCKDDDLRLKVLLGGCIPPLLSLLKSESTEARKAAAEAIYEVSSGGLSDDHVGTKIFITEGVVPALWDQLKPKNKQDKVMEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSNNAVAQSNAASLLARLMLAFSDSIPKVIESGAVKALLWLVGQENDISVRASAADALEALSSKSAGAKKAIVNADGVLILIGAIVAPSKEYSKKFLIGLITMATADVQDYLILSLTSLCCERVGLWEAINKREGIQLLVSMLGLSSEQHQEYAVQLLSTLIDKVDDSKWAITAAGGIPLLVQLLETGSPKAREEAAHILWNLCCHSEDIRACVESAGAIPAFLWLLKIGGSRGQEASAMALTKLVRIADAATINQLLVLLFGDSPSSKAHTIRVLGHVLTMASRKDLLRKGSAANKGLRSLVQVLNSSNEETLEYAASVLADLFSTRQDICDSLATDEIVLPCMKLLTSKTQVVATQSARALSALSRPIKSRSANMMPYIAEEDVKPLIKLAKSSSIDAVETAVAALANLLFDPSIAAEALAGDVVSSLTRVLTEGTLEGKQNASRALHQLLNLFPVGDVLKGNAQYRFAVLALVDSLNAMNMDGTDAADALEVVALLARTKEGLCSTYPPWSVLSEMPSNLEPLVCCLAEGPPSVQDKAIEILSKLCGDQLFVLGDLLATRPRSINALADRLMNSCLEIKVGGAALLFCAAKGHKELSMDVLDNSGYLKPLIYALVDMMKQNSSCSSEIEVQNSTDFMERNAFQEVLWLLSIIASFDTKNRLIIMEAGGLEALSDKLVSHASNPQAEFEDTEGIWITALLLAILFQDANVVLSPATVCIIPSLTHLLRSDEVNDKYFSAQAMASLVCNGDKGINLAVANSGAVTGLLTIIGNIESDMPNLVALSDEFSLVRNPDQVVLDHLFEIEDVRVGSTARKSIPLLVDLLRPIPERPSAPPVAVKLLTRLADGSDTNKLIMAEAGALEALTKYLSLSPQDSTEASISELLRILFCNSDLIKHEASASSLNQLIAVLRLGSRNARYSAARALHELFDAESIRDSELAKQAIQPLVDMLNTTSGSEQVAALIALIKLTSGNSSKASLFADVEGNPLQSLYQILSSASSLELKSNAAQLCLVLFANRKIRADPLALECIEPLISLMQSDSATAIEAGVCAFERLLEDEQHVELAVAYNVVNLLVSLMAGSNYQLIEAAISALIKLGKDRTPCKLDMVKAGILDNCLKLLELAPSSLCSTIAELFRILTNSNAIARSSASAEIVEPLFQVLLRQDIDLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILSLQQTAIKALEKISISWPKAVADAGGIFELAKVIIQDDPQPPHAFWESAALVLSNVLCSNADYYFKVPVVVLVKLLHSKVENTISIALNGLIIHERSDASSAEQMMEAEAIDALLDLLRSHQCEEASGRLLEALFNNVKIREMKASKYAIAPLSQYLLDPQTRSQSGKLLAVLALGDLSQHEGHARASASVSACQALVSLLEDQPTEEMMMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNPDVARQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFMNFPKLHISEAATLCIPHLVGALKSGGEVAQDSILDTLCLLRHSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQAMGSTNAFCRLTIGNGPPKQTKVVSHSISPEWKEGFTWAFDVPPKGQKLYIICKSKNTFGKATLGRVTIQIDKVVNEGVYSGLFSLNHDRNKDGSSRTVEIEIIWSNRISDVDL 2063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2524 2063 Pfam Armadillo/beta-catenin-like repeat 453 488 IPR000225 GO:0005515
Dere05g2524 2063 Pfam C2 domain 1936 2035 IPR000008 -
Dere05g2524 2063 Gene3D - 573 750 IPR011989 -
Dere05g2524 2063 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 581 608 IPR000225 GO:0005515
Dere05g2524 2063 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1101 1145 IPR000225 GO:0005515
Dere05g2524 2063 Gene3D - 84 252 IPR011989 -
Dere05g2524 2063 CDD C2 1937 2027 - -
Dere05g2524 2063 Gene3D - 1271 1538 IPR011989 -
Dere05g2524 2063 Gene3D - 253 378 IPR011989 -
Dere05g2524 2063 SMART C2_3c 1936 2032 IPR000008 -
Dere05g2524 2063 Gene3D - 751 1264 IPR011989 -
Dere05g2524 2063 Gene3D - 1539 1935 IPR011989 -
Dere05g2524 2063 SUPERFAMILY ARM repeat 143 742 IPR016024 -
Dere05g2524 2063 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1730 1773 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 943 992 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 1344 1384 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 1636 1677 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 1762 1802 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 1471 1512 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 306 347 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 1134 1174 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 658 697 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 1176 1216 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 173 213 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 1303 1343 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 448 489 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 263 304 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 218 262 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 407 447 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 491 531 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 570 610 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 698 738 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 612 652 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 131 172 IPR000225 GO:0005515
Dere05g2524 2063 SMART arm_5 1386 1426 IPR000225 GO:0005515
Dere05g2524 2063 SUPERFAMILY ARM repeat 1104 1472 IPR016024 -
Dere05g2524 2063 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 317 361 IPR000225 GO:0005515
Dere05g2524 2063 ProSiteProfiles C2 domain profile. 1916 2033 IPR000008 -
Dere05g2524 2063 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 460 502 IPR000225 GO:0005515
Dere05g2524 2063 SUPERFAMILY ARM repeat 804 1216 IPR016024 -
Dere05g2524 2063 SUPERFAMILY ARM repeat 1515 1933 IPR016024 -
Dere05g2524 2063 Gene3D - 379 572 IPR011989 -
Dere05g2524 2063 Gene3D C2 domain 1936 2061 IPR035892 -
Dere05g2524 2063 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1934 2039 IPR035892 -
Dere05g2524 2063 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 85 376 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2524 Dere-ChrDere05 35754783 35765452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2524 296 590 U-box Gene Family AT3G46510 25.079 4.61e-10 62.8