Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2512 ATGGCGGATTCAAGGGTGGAGACCATTTCAAGACTAGCCCAATGGAAAATTGACAACTTCGGACCTTGCTCTTACAAAAAATCCGACCCTTTCAAGGTCGGACTCTGGAACTGGTACTTATCTATAGAAAGGAATAGGTACTTGTACATACATCTATTTCCAGAGCCTTCACGGGTTTCCAAGGAACACCCCCCAATTGCTCGATTTATTCTCCGAGTGTCTAATACCGGCTCGTCCCGCAGATTTTACATTTCTCCTGTTCATGAAAGACTGCTTAGGACATGTGATGACTTTGTCTGGCCTGTTGATACTACATTTGTTGGTCGCTTCATTATTGATGTTGAATTTCTTGACCTGAAGATCTGTCCTCTGAATGGTGGAGAAGCCTGTTCTATATGGCCGTCTGATGGAAAATTGCAAACTGTTGCTGCTCAAAGCACCCTCCGGTGCCTCTCTCGCATGCTTGATGAGGGTATACATGCTGATCTCACCATTAACACTGCAGATGGTACATTGAAAGCTCACAAGGCAGTTTTGTCTGCAAGTTCTCCTGTGTTTCAGAGCATGTTTCATCACAACCTGAAGGAGAAAGAGTCATCTACAATCCACATAGAAGACATGTCACTAGAATCTTGCATGGCCCTTCTAAGTTACTTGTACGGCACAATAAAACAAGAAGACTTCTGGAAGCACCGGCTTGCATTGCTTGGAGCAGCCAATAAATACGACATTACTGGTCTTAAAGATACCTGCGAGGAAAGCCTATTGGAAGATCTTAACTCTGGAAATGTCCTCGAGAGACTAAACGAGGCTTGGCTCTATCAGCTACACAAGTTAAAGAAAGGATGCTTGACGTTCTTATTTGATTTTGGTAAGATATATGACGTTAGAGAAGAAATAAACAACTTCTTCAGGTATGCAGATAGGGAGCTGATGATTGAGATGTTTCAGGAAGTGCTTACAATTTGGAAACCAGTATAG 981 0.4281 MADSRVETISRLAQWKIDNFGPCSYKKSDPFKVGLWNWYLSIERNRYLYIHLFPEPSRVSKEHPPIARFILRVSNTGSSRRFYISPVHERLLRTCDDFVWPVDTTFVGRFIIDVEFLDLKICPLNGGEACSIWPSDGKLQTVAAQSTLRCLSRMLDEGIHADLTINTADGTLKAHKAVLSASSPVFQSMFHHNLKEKESSTIHIEDMSLESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDITGLKDTCEESLLEDLNSGNVLERLNEAWLYQLHKLKKGCLTFLFDFGKIYDVREEINNFFRYADRELMIEMFQEVLTIWKPV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2512 326 ProSiteProfiles BTB domain profile. 161 220 IPR000210 GO:0005515
Dere05g2512 326 CDD BTB_POZ_ZBTB_KLHL-like 160 242 - -
Dere05g2512 326 PANTHER OS08G0495500 PROTEIN-RELATED 1 325 IPR044714 -
Dere05g2512 326 SUPERFAMILY TRAF domain-like 12 87 - -
Dere05g2512 326 CDD MATH 15 101 IPR002083 GO:0005515
Dere05g2512 326 Pfam BTB/POZ domain 153 257 IPR000210 GO:0005515
Dere05g2512 326 SUPERFAMILY POZ domain 144 257 IPR011333 -
Dere05g2512 326 SMART BTB_4 161 259 IPR000210 GO:0005515
Dere05g2512 326 Gene3D Potassium Channel Kv1.1; Chain A 135 288 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2512 Dere-ChrDere05 35622324 35624534 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere05g2512 BTB 4.9e-23 CL0033