Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2501 ATGGCTCATATCACCACCGATTCCCCCCTCTCTCGTCGCATAGTTCGTTCCTTCTTGGACTTCCTCAACTCAGTTGAACCGGCCCCTGGCGTGGATGTAGAAGGGCTTGAGGTTGCTAGGGAGTGTTTGACAGAGGTGTTCAAGCTTAACTCATCTCCTATTGATGGTCATGCAAAATCTTATTCTTTGGTTGACATATTCAAGTCCCTTGAATCAAGCAAGCAATGTGAAGCTTGTAAGTCAGATGTTGGTAATCAACCAGATTATATTGATGCTTCGAGTTCATTCACTGCCCAGAATGCTGCTCATACACCAAATCATTTGGAGGACGAAGATTGGACACGAGGGTCTCACACTTTGGGAGTTTCGAAAGATGAACTCTGTGGGCAATTTTTTGCTGCTCTAGAGAAAATCCACTTCTTTAGAGTCAATTCTGATGCAAGTGATGACCCAGTGCAACTGGAGAAAGCATCCCGTATATTTAATGATGCTATAGTGGATATGGAAAGATCTGGTTGTCAGGAGTTTAGTCTGAAGAACTTGGCTGAATCGCTAAAATCACAAGGTAATAAGGCAATGCAATCCAAGCAATACCCTGATGCAATCGAGTTGTATAACTGTGCAATTGCACTATGTGAAAAAAATGCTGTTTACTACTGCAACAGGGCAGCTGCTTACACTCAGATCCACAAATATATGGAAGCAATCCAAGATTGTCTTAAAGCTATTGAAATTGACCCGAACTATAGTAAGGCATACAGTCGCCTGGGTTTAGCTTATTATGCTCAGGGAAATTACAGAGATGCTATTGATAAAGGGTTTAGAAAAGCCTTGCAATTGGATCCAAATAATGAGTCTGTCAAAGAAAATATACGGGTTGCTGAGCAAAAATTGGTAGAAGAGCAACATCGGGCAGATCACAATCAGAATTCAGGACCATCTCAAGAGTCTCAGAACCAGTCCACACGAGGGTCAAGAAGTAATGCAGCGCCGCCACCATTTAACTCAATGCCATTTAATGCCAACGATCTTGCAAGCTTGTTTATGAACATAGCCGCAAACAGTGCCAATGCATATCAAGGACAGCATCCTCAGGAAAGACAAGGAGAAGATAGCAATACCAGTTCAACTAATGAACCTGAAATTAGAAGTGGGGGCCAAATTCATCTACACTTTGACCAAATGCCCGAAGATTTGACGGGGGCGTTTAGATCTGTGATGGAAATGTTTTCTGGGGCAGCACCTCCTGGCCCTGGGCAACCACAAGAACCACAAGATCACTTCAATGGAAGAACTGCACCAAACTAA 1308 0.4312 MAHITTDSPLSRRIVRSFLDFLNSVEPAPGVDVEGLEVARECLTEVFKLNSSPIDGHAKSYSLVDIFKSLESSKQCEACKSDVGNQPDYIDASSSFTAQNAAHTPNHLEDEDWTRGSHTLGVSKDELCGQFFAALEKIHFFRVNSDASDDPVQLEKASRIFNDAIVDMERSGCQEFSLKNLAESLKSQGNKAMQSKQYPDAIELYNCAIALCEKNAVYYCNRAAAYTQIHKYMEAIQDCLKAIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFRKALQLDPNNESVKENIRVAEQKLVEEQHRADHNQNSGPSQESQNQSTRGSRSNAAPPPFNSMPFNANDLASLFMNIAANSANAYQGQHPQERQGEDSNTSSTNEPEIRSGGQIHLHFDQMPEDLTGAFRSVMEMFSGAAPPGPGQPQEPQDHFNGRTAPN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2501 435 Pfam Tetratricopeptide repeat 251 284 IPR013105 -
Dere05g2501 435 MobiDBLite consensus disorder prediction 405 435 - -
Dere05g2501 435 MobiDBLite consensus disorder prediction 358 383 - -
Dere05g2501 435 Gene3D Tetratricopeptide repeat domain 177 333 IPR011990 GO:0005515
Dere05g2501 435 SMART tpr_5 250 284 IPR019734 GO:0005515
Dere05g2501 435 SMART tpr_5 216 249 IPR019734 GO:0005515
Dere05g2501 435 SMART tpr_5 182 215 IPR019734 GO:0005515
Dere05g2501 435 Coils Coil 284 304 - -
Dere05g2501 435 PANTHER LD24721P 1 413 IPR047150 -
Dere05g2501 435 ProSiteProfiles TPR repeat profile. 250 284 IPR019734 GO:0005515
Dere05g2501 435 SUPERFAMILY TPR-like 181 295 IPR011990 GO:0005515
Dere05g2501 435 MobiDBLite consensus disorder prediction 308 338 - -
Dere05g2501 435 Pfam Tetratricopeptide repeat 216 249 IPR001440 GO:0005515
Dere05g2501 435 MobiDBLite consensus disorder prediction 302 338 - -
Dere05g2501 435 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 177 329 - -
Dere05g2501 435 Gene3D Immunoglobulin FC, subunit C 3 74 - -
Dere05g2501 435 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2501 Dere-ChrDere05 35571840 35580472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2501 181 280 U-box Gene Family AT3G07370 33.000 4.22e-09 55.5